RCPedia: Rtcs

Summary

Retrocopy Name	RPLP0P3	Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species	Macaca fascicularis
Coordinates	chr2:124280923-124281353 UCSC
Strand	-
Parental Sequence	NM_001283935.1
Parental seq. overlap	372 bp
Parental seq. overlap (%)	34.8%
Genomic Region	Intergenic
Retrocopy Summary	RPLP0P3, located on chr2:124280923-124281353, is a retrocopy of the parental gene RPLP0. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	RPLP0
Full Name	N/A
Also known as	-
Coordinate	chr11:124080200-124084784
Strand	-
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	RPLP0P14
Chimpanzee	Pan troglodytes	RPLP0P4
Bonobo	Pan paniscus	RPLP0P4
Gorilla	Gorilla gorilla	RPLP0P5
Orangutan	Pongo abelii	RPLP0P4
Gibbon	Nomascus leucogenys	RPLP0P13
Green monkey	Chlorocebus sabaeus	RPLP0P6
Rhesus	Macaca mulatta	RPLP0P3
Baboon	Papio anubis	LOC103875584P2
Golden snub-nosed monkey	Rhinopithecus roxellana	RPLP0P1
Marmoset	Callithrix jacchus	RPLP0P11
Mouse lemur	Microcebus murinus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dolphin	Tursiops truncatus	Without Homology
Horse	Equus caballus	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Cat	Felis catus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>RPLP0P3
CTGAGTTCAGGGACAAATTGCTGGCCAGTAAGGTGCCAGCTACCACCAATGCTGGTGCCATTGCCCCATGTGAAGTCTCTGTGCCCAGAACACCATGCTGGGGCCAGAGAAGACTCCCTTCGTCCAGGCATTATGTATTACCATTAAAATCTCCAGGGGCATCGTTGAAATCCTAAGGGATGTGCAGCTCATTGAGACTGGAGACAAAGTGGGAGCCAGTGAAGCCATACTGCTGAACATCTCCTGCTATTCCTTGGGTGGATCATCAAGCAAGTGTCTGACAATGGCAGCATCTACATCCCTGAAGTGCTTGACATCACAGGGGACACTCTGCATCCTCACTTCCAGGGCGTCTGCATGGTGCCTGTGTTTGCAGATTGGTTACCCAGCTGTTGCATCAGTACCCCATTTTATCATCAATGGGTACAAAG

>NM_001283935.1
CTTCTCTCGCCAGGCGTCCTCGTGGAAGTGACATCGTCTTTAAACCCTGCGTGGCAATCCCTGACGCACCGCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTTAAGATCATCCAACTATTGGATGATTATCCGAAATGTTTCATCGTGGGAGCGGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTTCGAGGGAAGGCCGTGGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGAGGGCACCTGGAAAACAACCCAGCTCTGGAGAAACTGCTGCCTCATATCCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGATCTCACTGAGATCAGGGACATGTTGCTGGCCAATAAGGTGCCAGCTGCTGCCCGTGCTGGTGCCATTGCTCCATGTGAAGTCACTGTGCCAGCCCAGAACACTGGACTCGGGCCCGAGAAGACCTCCTTTTTCCAGGCTTTAGGTATCACCACTAAAATCTCCAGGGGCACCATTGAAATCCTGAGTGATGTGCAGCTGATCAAGACTGGAGACAAAGTGGGAGCCAGCGAAGCCACGCTGCTGAACATGCTCAACATCTCCCCCTTCTCCTTTGGGCTGGTCATCCAGCAGGTGTTTGACAATGGCAGCATCTACAATCCTGAAGTGCTTGACATCACAGAGGAAACTCTGCATTCTCGCTTCCTGGAGGGTGTCCGCAATGTTGCCAGTGTCTGTCTGCAGATCGGCTACCCAACTGTTGCATCAGTACCCCATTCTATCATCAACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGACGGATTACACCTTCCCACTTGCTGAAAAGGTCAAGGCCTTCTTGGCTGATCCATCTGCCTTTGTGgctgctgcccctgtggctgctgccaccacagctgctcctgctgctgctgctgcagcCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGATATGGGATTTGGTCTCTTTGACTAATCACCAAAAAGCAACCAACTTAGCCAGCTTTAT

>NM_001283935.1 

CTTCTCTCGCCAGGCGTCCTCGTGGAAGTGACATCGTCTTTAAACCCTGCGTGGCAATCCCTGACGCACCGCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTTAAGATCATCCAACTATTGGATGATTATCCGAAATGTTTCATCGTGGGAGCGGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTTCGAGGGAAGGCCGTGGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGAGGGCACCTGGAAAACAACCCAGCTCTGGAGAAACTGCTGCCTCATATCCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGATCTCACTGAGATCAGGGACATGTTGCTGGCCAATAAGGTGCCAGCTGCTGCCCGTGCTGGTGCCATTGCTCCATGTGAAGTCACTGTGCCAGCCCAGAACACTGGACTCGGGCCCGAGAAGACCTCCTTTTTCCAGGCTTTAGGTATCACCACTAAAATCTCCAGGGGCACCATTGAAATCCTGAGTGATGTGCAGCTGATCAAGACTGGAGACAAAGTGGGAGCCAGCGAAGCCACGCTGCTGAACATGCTCAACATCTCCCCCTTCTCCTTTGGGCTGGTCATCCAGCAGGTGTTTGACAATGGCAGCATCTACAATCCTGAAGTGCTTGACATCACAGAGGAAACTCTGCATTCTCGCTTCCTGGAGGGTGTCCGCAATGTTGCCAGTGTCTGTCTGCAGATCGGCTACCCAACTGTTGCATCAGTACCCCATTCTATCATCAACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGACGGATTACACCTTCCCACTTGCTGAAAAGGTCAAGGCCTTCTTGGCTGATCCATCTGCCTTTGTGgctgctgcccctgtggctgctgccaccacagctgctcctgctgctgctgctgcagcCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGATATGGGATTTGGTCTCTTTGACTAATCACCAAAAAGCAACCAACTTAGCCAGCTTTAT

Publications

PMID - Link	Title