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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPLP2P3
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr16:59633174-59633632  UCSC
Strand +
Parental Sequence XM_005576799.2
Parental seq. overlap 387 bp
Parental seq. overlap (%) 76%
Genomic Region Intragenic (LOC102145228)
Retrocopy Summary RPLP2P3, located on chr16:59633174-59633632, is a retrocopy of the parental gene RPLP2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPLP2
Full Name N/A
Also known as -
Coordinate chr14:633963-640174
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPLP2P4
Chimpanzee Pan troglodytes RPLP2P4
Bonobo Pan paniscus RPLP2P4
Gorilla Gorilla gorilla RPLP2P2
Orangutan Pongo abelii RPLP2P4
Gibbon Nomascus leucogenys RPLP2P3
Green monkey Chlorocebus sabaeus RPLP2P2
Rhesus Macaca mulatta RPLP2P4
Baboon Papio anubis RPLP2P3
Golden snub-nosed monkey Rhinopithecus roxellana RPLP2P4
Marmoset Callithrix jacchus RPLP2P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPLP2P3
TTTTTCCTCCCTGACTCCGCCGAGGTTGCATGCATGGAGGCCTCGCCGCCGCCGCTACCGTAGACGCCGGCCCAGGTGCGCTAGGTCGCCTCCCACCTGCTAGCTGCCCTCGGGGGCAACCCCTCCCTCAGCGCCAAAGACATCAAGAGGATCCTGGGCAGCGTAGGCATCGAGGCGGACGACGACCAGCTCAACAAGGTTATCAGTGAGCTGAATGAAAAAAGCATTGAAGACGTCATTGCCCAGGATATTGGCAAGGTTGCCAGTGTACCTGCCGGTGGGGCTGTGGCTGTCTCTGCTGCCCCAGGCACTGCAGCTCCTGCTGCTGGTTCCACCCCCGCTGCAGCAgTGTCCAAAGAGTCAGACAATGACATGGGATTTGGTCTCTTTTATTAAATTCCTGCTCCCCTGCAAATAAAGCCTTTTTACACAT
>XM_005576799.2
GAGGCTTCTGGGTAGCGGTTTACCCCCGCCCCTTGCATCGGCGCCTTCCTTTTCCTCCCTGACACCGCCGAGGTTGCACGCGTGAGGCCTCTccgccgccgccgcagacgccgccgcAATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTCGGGGGTAACTCCTCCCCCAGCGCCAAGGACATCAAGAAGATCTTGGACAGCGTGGGCATCGAGGCGGACGACGACCGACTCAACAAGGTTATTAGTGAGCTGAATGGAAAAAACATTGAAGACGTCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCCGGTGGGGCTGTGGCCGTCTCCGCTGCCCCAGGCTCTGCAGCACCTGCTGCTGGTTCCGCGCCTGCTGCAGCAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAGTCAGACGATGACATGGGATTTGGCCTCTTTGATTAAATTCCTGCTCCCCTGCAAATAAAGCCTTTTACACATA

Publications

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