Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS10P25
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr15:50328056-50328584  UCSC
Strand -
Parental Sequence XM_031667050.1
Parental seq. overlap 440 bp
Parental seq. overlap (%) 66.8%
Genomic Region Intergenic
Retrocopy Summary RPS10P25, located on chr15:50328056-50328584, is a retrocopy of the parental gene RPS10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS10
Full Name N/A
Also known as -
Coordinate chr6:32748638-32757202
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS10P21
Chimpanzee Pan troglodytes LOC104001113P17
Bonobo Pan paniscus RPS10P21
Gorilla Gorilla gorilla LOC109025084P20
Orangutan Pongo abelii LOC100439704P19
Gibbon Nomascus leucogenys RPS10P6
Green monkey Chlorocebus sabaeus RPS10P4
Crab-eating macaque Macaca fascicularis RPS10P23
Rhesus Macaca mulatta RPS10P27
Golden snub-nosed monkey Rhinopithecus roxellana RPS10P31
Marmoset Callithrix jacchus RPS10P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS10P25
cctttcctgcctctgccccagaCACTGCAGCGCCCAAGATGTTGATGTCCAAAAAGAACTGGGTTGCCATTTATGAACTCCTGTTGAAGGAGGGAGTGGTGGTGGCCAAGAGAGATGTCTATACGCCTAAGCACACAGAACTGGCAGACAAAAATGTGCCCAAGCTTCATGTCTTAAAGGCCATCCAGTCTCTCAGGTATCAAGGCTGCCTGAAGAAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTACCAACAAGAGTATCTAGTTTCTCTGTGATTAACTCCTTGAAATAATACTGCCCCACTGTGTCACAGCTGTCCTGAGATTGGCAGGCCTTGGCCCAAAGGTCTGGAGGGCCAGTGGTGAGATTCACAAGAGGGGAAGCTGACAGAGACACCTACAGATGGAGTGATGCCCCCCTGGTGACAACAAGAAAGCTGAGGATGGGCATGGGTCAGCAACTGAATTCCAGATTTGGTCTTGGACGTGATCAGCCACCTTAGTAAAGTTGGAGGAGATTATTTG
>XM_031667050.1
GGTCCTGGCGGGGGGCGGGCCCACGCCAGCCCGGAAGAGACGCAGCACCGCGCATGCTCCTTCCTTTCCAGCCCCGGCCCCGGACCCTGCAGCTCCCGAGATGTTGATGCCTAAGAAGAACCGGATTGCCATTTACGAACTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGATGTCCACATGCCTAAGCACCCGGAGCTGGCAGACAAGAATGTACCCAACCTTCATGTCATGAAGGCCATGCAGTCTCTCAAGTCCCGAGGCTACGTGAAGGAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTACCAATGAGGGTATCCAGTATCTCCGTGATTACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAGCCGtccagagactggcaggcctcggCCTAAAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCACCTGGTGCTGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAACCGAATTCCAGTTTAGAGGCGGATTTGGTCGTGGACGTGGTCAGCCACCTCAGTAAAATTGAAGAGGATTATTTTGCATTGAATAAACTTACAGCCAAAAAACCTTAA

Publications

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