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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS7P12
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr17:57643013-57643165  UCSC
Strand +
Parental Sequence XM_003908230.5
Parental seq. overlap 138 bp
Parental seq. overlap (%) 17.6%
Genomic Region Intragenic (CEP112)
Retrocopy Summary RPS7P12, located on chr17:57643013-57643165, is a retrocopy of the parental gene RPS7. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS7
Full Name N/A
Also known as -
Coordinate chr14:3456657-3462800
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS7P19
Chimpanzee Pan troglodytes RPS7P15
Bonobo Pan paniscus RPS7P15
Gorilla Gorilla gorilla RPS7P8
Orangutan Pongo abelii CLIC1P3
Gibbon Nomascus leucogenys CLIC1P4
Green monkey Chlorocebus sabaeus RPS7P3
Crab-eating macaque Macaca fascicularis RPS7P11
Rhesus Macaca mulatta RPS7P11
Golden snub-nosed monkey Rhinopithecus roxellana RPS7P16
Marmoset Callithrix jacchus CLIC1P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS7P12
ATGAAACTGGATGGCAGCCAGCTCATAAAGGTTCATTTGGACAAAGCACAGCAGAACAATACGGAACACAAGGTCAAAACTTTTTCTGGTGTTTATAAGAAGCTCATGGGCAAAGATGTTGATTTTGAATTTCCAGAATTTCAACTGTAAACA
>XM_003908230.5
GGGACTGTCTAGCCTTCTACCGCTTCTCAGTGATGTTCCGGTTTCCGCCCTTCTCCTCGCGCTGTTTACGCCTCTTCCCTTCCGCCGCCAGAGTTTGACGTGCTCTCGCGAGATTTGGGCCTCTTCCTAAGCCGGCGCTCGGCGAGTTCTCCCAGGAGAAGACCATGTTCAGTTCGAGCGCCAAGATCGTGAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCCGGCATCTCCCAGGCTCTTCTGGAGCTGGAGATGAACTCGGACCTCAAGGCTCAGCTCAGGGAGCTGAATATTACGGCAGCCAAGgaaattgAAGTTGGTGGTGGTCGGAAAGCTATCATAATCTTTGTTCCTGTTCCTCAACTGAAATCTTTCCAGAAAATCCAAGTCCGGCTAGTACGCGAGTTGGAGAAAAAGTTCAGTGGGAAGCATGTTGTCTTTATCGCTCAGAGGAGAATTCTGCCTAAGCCAACTCGAAAAAGCcgtacaaaaaataaacagaagcgTCCCAGGAGCCGTACTCTGACAGCTGTGCATGATGCCATCCTTGAGGACTTGGTCTTCCCAAGCGAAATTGTGGGCAAGAGAATCCGCGTGAAACTAGATGGCAGCCGGCTCATAAAGGTTCATTTGGACAAAGCACAGCAGAACAATGTGGAACACAAGgtTGAAACTTTTTCTGGTGTCTATAAGAAGCTCACAGGCAAGGATGTTAATTTTGAATTCCCAGAGTTTCAATTGTAAACAAAAgtgactaaataaaatatatattcacagtA

Publications

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