Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SEPHS1P2
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr10:16231365-16233867  UCSC
Strand +
Parental Sequence XM_021943051.2
Parental seq. overlap 2077 bp
Parental seq. overlap (%) 68.1%
Genomic Region Intergenic
Retrocopy Summary SEPHS1P2, located on chr10:16231365-16233867, is a retrocopy of the parental gene SEPHS1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SEPHS1
Full Name N/A
Also known as -
Coordinate chr11:112647953-112678279
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SEPHS1P7
Chimpanzee Pan troglodytes SEPHS1P1
Bonobo Pan paniscus SEPHS1P1
Gorilla Gorilla gorilla SEPHS1P1
Orangutan Pongo abelii SEPHS1P1
Gibbon Nomascus leucogenys SEPHS1P6
Green monkey Chlorocebus sabaeus SEPHS1P2
Crab-eating macaque Macaca fascicularis SEPHS1P2
Rhesus Macaca mulatta SEPHS1P2
Golden snub-nosed monkey Rhinopithecus roxellana SEPHS1P4
Marmoset Callithrix jacchus SEPHS1P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SEPHS1P2
TACTGACAGGGAGAGGGATAAAGTGATGCCCCTGATTATACAGGGTTTTAAAGACAAAGCTGCGAAAGCAGGAACGTCTGTAACGAGTGGCCAAACAGTGCTACTCTCCTGGATTGTTTTGGGAGGAGTCACTACAACTACAGGCCAATGAATTTACCATGCCAGACAATACAGTGCCAGGGAAGGGATGTACCAGAGTTCACAAAACCCCTGGGGCCACAAGTAGCAGTGGCTGTGCACCACTGACACTTGTGTCAAATAGCAGTGGCTGGATATTCCTGAAAAAAcgaaataaaattaaactagcGTCACCCACGAAGATGTAGAGTTGACATACCAAGCAGCAATAATGAACACGGTGAAAAGTTCAACAGGAAAGCTTCATCATGCACACGTTCGGTGCCCACGCAGCCACAGACATCATGGGCATTAGGATTTGGGGCCATGCGCAGAACCTGACCAAGCAGCAGAGGAATGGATTTTTTGTAATTCACAGTGGCTCCTGTGCTGGCCAAGATGACTGTGATGAGCAATGCCTGTGGCAACGTGTTCAGCCTCATACATGGAACATGTCCAGAGACAGCAGGAGGCATTCTGATCTGTTTACCACATGAGCAAGCAGCTTGGCTCTGTGCAGAGATAAACTACCCCAAATGCGGTGGAGGCCACCAAGGATGGGATTGTTGAGAAGGGCAACCATGCAGCTGGAATCATAGACCAACCCTGGATCACTGAGGTTACCCAAATAGCCACTCAAAATGTGAATCCCACACCTGGGGCCCCTTCTTAATCTAGACAGAAATAgctatttggttttgttttaaaatagatctATTTCCTTTATCATCACTTCAATTAAAgactataaacaacaaaaatctcatGGTGTCTACACATCTGGTGACCCTAGGTCAATTTGTGAGTGGatacaattaacaaaataaaatccattgtctttttttcctgttacatTAACTGAAATTGCACCTAATCTTGAGTCAGCTTCTGAGTTGAGAATTATATTGTTACCAGATACTGTTGATTCATTTTGAATCTCTAGACACTTATCTCTTGCACATAGGTGCTCTCTTTTTACAAGTGCTTTCATGTAGGACAGACATTACCAATAGCAATGTCAAATAGCAGttgatgtcttttcattttatgtatgtttatcaGGTAAGTCTTATGGTTTTTTAAGTATCTTGAATGGTTTTCTGGAAAGACAGCATTGGTAAGTGGCACATGACAGTATCCCAGTCATAAGAGGGTTATGTGATTACTTCTAGTCTTTGAATTGAAAAGTCTTGTCTTGTCATTCAAGAGCGTCTTATACCCAGGACATTCTCCAGTACAGAATTCGGTTCAACACGGCAAGTACTTCACTgcatgaaaaacattttgaaaaatgaaattgtatttctttttttgtagccTTCCTCATATTTACAGTAATAACATTAATGGTTTTCTTTATCAATAGCAAAAAAGGATACTTTTTGCAATGTAATGTAATTAGACATTTCATAATGCAACAAAGAATTCCATTCCAAAAGAAGGTTCGTGTATAACACTCATTtaaagaCTGTTCTATGGATGGTagtgtttaatacattttatattttgtatagtgATTTCAGGccttttttcttaaaagcaaGAGCTATATTTAGTCTAATTCTTAGCACTGTTTTGTCCTTTGCACTAGTACTTTTTTTGTGCATGTTTTTTGTGATCCATGTTAAAAATCTGCATTCCCAAAATTGCAGCTCAGATGTAAGcttattattcaaataaatatataattcttaaaattgCTCTTGTTTAATCAGATGCTCTTTTAgtattattttagaaacattgaAAGGGTTTTTTGCCTAAAGCACTATTTGCTGGAAGAAACTAGATTTTGGttttataaaactcttaaatCTTTCATGGGACctatattttcttgaattaaatTTTTACTTCTAGAATAAATAAGCAATCTAAAAAGGTGTTATCTGTGTTACTTAAAAACAGGCTTTCTTATATTTTAACCTACTAAACAATGAGGAGGAATTCCTGTCGTCAAGCGTAAGGGCACTGAATTCTCAGGTGTCTGTCTTCATAAGAGAAAAAGCGGCACATCCTCCAAGTTTCAGACACTTCCTGCTCACAGGCACCAAAGCCACGTGTGTAAACTGATCAACTTCTTGGCAAAGGAAACCACCCCTGGGAAAACGAAGCCCCCTGGAAGAGGCGTTCACTTGGACACACCGTGCTCCAGGAACCAGTGGGCAGCCTTTATACGTGTGTGACCAGACCCCCAGCCATAGGGTGGTGTGCAGTACAGAACAGCATGCTATGTAACTGAAACTAACTGGACATTTTACAGGAATTGATAGAGATGTTGGTCGTCAAAAGCTTCAAATCAGTGATCTGCAAAATAAAACGTGTTGGAAATCTCTGA
>XM_021943051.2
GTGGATCCATAAAGAACCCAGCCAACCcgcagagggaggggaggggctgagCTGTGAGGAGAGCGGGGCCCAAGAACCATGTCTACGCGGGAGTCCTTTAACCCGGAAAGTTACGAATTGGACAAAAGCTTCCGGCTAACCAGATTCACTGAACTGAAGGGCACAGGCTGCAAAGTGCCCCAAGATGTCCTGCAAAAATTGCTGGAATCTTTACAAGAGAACCACTTCCAAGAAGATGAGCAGTTTCTGGGAGCCGTTATGCCAAGGCTTGGCATTGGAATGGATACTTGTGTCATTCCTTTGAGGCACGGTGGGCTTTCCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGACGACCCTTACATGATGGGCAGGATAGCATGTGCCAATGTCCTCAGTGACCTCTACGCAATGGGGGTCACGGAATGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACTGACAGGGAAAGGGATAAAGTGATGCCTCTGATTATCCAAGGTTTTAAAGACGCAGCTGAGGAAGCAGGAACGTCTGTAACGGGCGGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGAGTAGCTACCACTGTCTGTCAGCCCAATGAATTTATCAtgccGGACAATGCAGTACCAGGGGATGTGCTGGTGTTGACAAAACCCCTGGGGACACAGGTGGCAGTGGCTGTGCACCAGTGGCTGGATATTCCTGAGAAATGGAATAAGATCAAACTAGTGGTCACCCAAGAAGACGTAGAGCTGGCCTACCAGGAGGCAATGATGAACATGGCGAGGCTCAACAGGACAGCTGCAGGACTCATGCACACGTTCAATGCCCACGCGGCCACAGACATCACGGGCTTCGGGATTTTGGGCCATGCGCAGAACCTGGCCAAGCAGCAGAGGAACGAGGTGTCATTTGTAATTCACAACCTCCCGGTGCTGGCCAAGATGGCTGCGGTGAGCAAGGCCTGCGGAAACATGTTCGGCCTCATGCACGGGACCTGCCCAGAGACCTCAGGCGGCCTTCTGATCTGTTTACCACGTGAGCAAGCAGCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATATGGTGAAGGCCACCAAGCATGGATTATTGGGATTGTAGAGAAGGGCAACCGCACAGCCAGAATCATAGACAAACCCCGGATCATCGAGGTCGCACCACAAGTGGCCACTCAAAATGTGAATCCCACACCTGGGGCCACCTCTTAATCTAGACAGAAATAGctgtttggttttgattttaaatagATCTATTTCCCTTATCACTTCAATTAAAgactataaacaacaaaaatctcattGTGTCTACACATCGGGGTGACCTTAGGTCTGTTTGTAAGTGgatacaattaataaaataaaatccattgcctttttttcctgttaCATTAACTGAAGATGCACCTAATCTTGAGGCAGCTTCTGAGTTGAGAATTATATTGTTATCCAATACTGTTGATTCATTTTGAATCTTTAGACACTTATCTCTTGCCACATAGGCTCTTTTTAAAGGTGCTTTCACATAGCACAGACATTACCAGTAGTCATTTCAAATAGCAGTTGGTGtcttcattttatgtatatttatcatataagtctgattctttttttaagcGTCTTGAATGGTTTTCTGGAGAGCCAGCATTGGTAAGTTGCACATGAGGGTATCCCAGTCATATCCCAGTCATAGGAGGGTTGCATGATTCCTTTGAGTGTTTGATTTGAAAAGCCTAGTCTTGTCTCTCAAGAGCATCTTGGACCCAGAACATTCTCCGGTAGTGCATTCATTTCAACACGGCAAGTGCTTCTTCACTGCATGGAAAACCCtttgaagacaaaaaagaaatcttatttctttttttgtagccTTCCTGATATTTACAGTAATATCATTAACTGTTTTATCGATagcaaaaaaagaatactttttgCAATGTAATTAGATGTTCTATAGTGCTACAAGGAATTGCCTTCCGAATGGAGGTTCATGTATAATACTCATTTACAATTCAATATataattacacaaataatttttaaatataatcaataataaaGACTGTTCTGTGGATGGTagtgtttaatacattttatattttgtatagtgATTTCAggccttttgttttcttaaaatcagCAGCTGTTTAGCCTAATTCTTAGCATTATTTTGTCCTTTGCGCCAGTACTTTTTTGTGCACGTTTTTTGTGATCTGTGTTAAAAACCTGCATTGCCAACATTGCAGCTCGAACTTAAACttgttattcaaataaatatttaattttttaaattgctcttgTATAATCAGATGCCCCTTTTAGTATTATTTTAGAAGCATTGGGAGGGTTTTGCCTAAAGTACAATTTATCGGGAAAAACtagattttagttttataaaacttttaagtCTTTCATGGGACctatattttcttgaattaaatTTTGTAGTTCTAGAATAAATAGGCAATCTAAAAAGGTGTTATCTGTGTGTCGTAAAGTGGAGGCTTCCTTATATTTTAACCTACTGAGCAATGAGGAGGGATTCCTGTCATTAAGCACAAGGGCACTGGATCCTCAAGTGCCCACCTTCATGAGAGAAAAAGCAGCACATCCTGCATGTTTCTGGTGCTTCCTGCTCACAGGCATCAAAGCCGCACATGTAAACTGACTTTTTGCCAAAGGAAATGACCCCTGGGAAGATCAAGCTCTTGGAAGAGGCTTTAACTCGGACGCGACCTCCGGGAACCAGCGGGCAGGGCAGCCTTTATGCATATGTAACTGGACCTCCAGCCATAAGCATGGTGTGCAGTTTGGAAGAGCCTGCTACGGAACTGAAATTGATTGGACATTTTATAGGAATTGATATACAGATGTTGGTCCTCAAAAGCTGCAAACCAGTGGtctgcaaaataaaatgtgttggaAACCTCTGAGTAAGATCAA

Publications

PMID - Link Title