Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SSBP1P2
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr6:118309845-118310139  UCSC
Strand +
Parental Sequence XM_009203991.4
Parental seq. overlap 246 bp
Parental seq. overlap (%) 38%
Genomic Region Intergenic
Retrocopy Summary SSBP1P2, located on chr6:118309845-118310139, is a retrocopy of the parental gene SSBP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SSBP1
Full Name N/A
Also known as -
Coordinate chr4:16874775-16886963
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SSBP1P3
Chimpanzee Pan troglodytes SSBP1P3
Bonobo Pan paniscus SSBP1P3
Gorilla Gorilla gorilla SSBP1P2
Orangutan Pongo abelii SSBP1P3
Green monkey Chlorocebus sabaeus SSBP1P2
Crab-eating macaque Macaca fascicularis SSBP1P1
Rhesus Macaca mulatta SSBP1P2
Golden snub-nosed monkey Rhinopithecus roxellana SSBP1P1
Mouse lemur Microcebus murinus SSBP1P4
Cow Bos taurus SSBP1P1
Dolphin Tursiops truncatus SSBP1P3
Horse Equus caballus SSBP1P4
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SSBP1P2
CCAGTCAAAAGTCAACACGGCACAGAGCATCAGTATTCCTACCCAGCCTGAGAGATGTGGCATATCAGTATATGAAAAAGAGGTCTAGAAGTTATGTGGGAGGGAGGAAAACTATGATGAATACTTGGATACAAATAACATGAGGCAACAATCACAGCTGATAACATTATATTTCTGAGGGACCAGACAAAAGAGAAGGCATAGAGTGGGTAATTCTTCTTTGACCATTGTTTGGTACAGTCTCAATTCCAAATCATGTACAATCTTTATAGTTTCTAAGGACAAGacttaaaat
>XM_009203991.4
TCGAAGACCTGTGTTACAGGTCTGAAGGAGCAACCGGGGGAAGGCAGTTACATAGACACAGGGAATCTGACTTTGGAATATGTTCCTGTTGCTGTGTCAGAAAGTCACTCATGTGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTTTGGTTCTTGAAAGATCCCTGAATCGTGTGCAGTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACAGGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGACAGTGAAGTTTACCAAATGGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTTCGGCCAGGCCTCAGAGACGTGGCATATCAGTATGTGAAAAAGGGgTCTCGAATTTATTTGGAAGGGAAAATAGACTATGGTGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACTATCATAGCTGATAATATTATATTTCTGAGTGACCAGACGAAAGAGAAGGAGTAGAAAGGATGATTCTTCTTCGGCCATCATTGGGTACAGTCTCATTTCCAAGTCATGTATAATCTTTATCGCTCCCAAGGACAAGAATTAAAATACTCTTTTACATAAAA

Publications

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