Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name YWHAQP6
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr9:70946950-70948952  UCSC
Strand +
Parental Sequence XM_003908257.4
Parental seq. overlap 1412 bp
Parental seq. overlap (%) 61.8%
Genomic Region Intergenic
Retrocopy Summary YWHAQP6, located on chr9:70946950-70948952, is a retrocopy of the parental gene YWHAQ. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name YWHAQ
Full Name N/A
Also known as -
Coordinate chr14:9413179-9462402
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens YWHAQP7
Chimpanzee Pan troglodytes YWHAQP4
Bonobo Pan paniscus YWHAQP4
Gorilla Gorilla gorilla YWHAQP5
Orangutan Pongo abelii YWHAQP5
Gibbon Nomascus leucogenys YWHAQP5
Green monkey Chlorocebus sabaeus YWHAQP2
Crab-eating macaque Macaca fascicularis YWHAQP6
Rhesus Macaca mulatta YWHAQP7
Golden snub-nosed monkey Rhinopithecus roxellana YWHAQP8
Mouse lemur Microcebus murinus YWHAQP3
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>YWHAQP6
ttatCAGGAGAAAGTCAAGTCTGAACTGAGATCCATATTCATTACTGTCCTGCAATTTTTGGATAACTATTTACTATCCAATGCAACTAATCTAGAGAGTACGACCTTTTATCAAAAATGAAGGGAGATTATTTCCAGTACATTTGTTGCATGTGGTGATGGTTGAAACAAATGATAGATAATTCCCAAGGAGCTTCCTAAGAGGCATTTGATATAGTAAAGAGATGTAATCCATATACCCAACCTACCTGGGGCTGGCtcttaatttttctgtactttACTATGAGATCATTAATAACCCAGAGCTTGCCTGCGTACTGACTAAAACCACTTTTGATGAGGCCATAGAAGAACTTGATACACTGAGTGAAGATTCAAAGACAGCACCCTTATCATGCAGTTGCTTATAGAGACAACCTAACATTACAGCCATCAGACAGTGCAAGAGAAGAATGTGATGTGgtagaagagacagaaaagtaaaTGCATACAAGGTGTAATCTTTCTTCTCTTCAAGAAACTTTCGTACACATCTCCATTGCCTTTTCCACTTGGATTTCCTGTGGCAAAGAAACCCATTCatgatgattcatgtgTATGGGATCAACTGTTTATAGTTTTTCACAATGCAGCTTTGAGAAAACTCTATTCCTTTCGTTTGTCCTGGCCCTCCTGGTGTACAATTACTGCTATAGAAAAGTATTAATGgctttatttcatataaaatattagtaactTCCACTTATATAGTAGACTAAAAATGTACTTGATATTTAAGTAATCTGAACAAATTCTGTAAGCAATTATGTTTTGTACTACtgtaaatatctgaaaatatagtTAATTACAATTCGAGAGTATTCTGTGtaactttttgatttctttattccCTCCCTTACTCTTCTTCAAGGATTTCCTTTCAGTATGGAATGTCTCTGGCCTGGAGGGGAATTGGAATGTCTCCTATATAACAGTTTACAGAGGTCATGTGTATCCATAACAACAAGGTTTTCATTTGCTGCTGTTTAAGTTGACAACTTTCCTTCCCAATAAAAATTCATGTAcaccttttgtctttttcttccgGTATTCACCTTACCATGTAATAGAAGTATCATGTTGCTGTGAGGATGCATGCATTGCTTTAGGTAAATTAAAATGCATATCAGTACTTAATACCCTAGAAAGCAGAAATACATTACACAAGTCCAATTCTGAAACTTTAGTATTTTTCTGTGCAGATTTGTGCACATGTGAGAGGGTATCCGTTTCATCTAGTGATTGCTATTCTGAGTTGGACCAGCGTTTTGTGTTGCTAATGCACCGTGGTCCCAAAAAAGCCTTGCAAAAATGTTATGCCCTGTGTAACAGCAGAGTAGCATAAAATACACTTACACTTTATAAGCCATTTACTGTTGCTTTGTAACAATTGCCTACTCGTATTTTAAGGAATAGGTGAGTTCACTACTTTCTGAAGTTTATCATAGTTCTCTTGTATCTTATGCAAAGTATAGTAATGATACCCATAGTTCTGCATTGTGATACGCTTGTCTAGAGAAACCCAGAGATGTAAAAAATTGTACTACATTTTTCAGAGTGTTTTAACATAGATCAGCATCACAGGCTATCTATTCTTCAGATATAAATTATACATGTTAAGTGTTATATGGAATAAAGTGGACATTTTAAA
>XM_003908257.4
CGGCGCATCATTGGGCGGCGGACCTCCCCTCGGCTCCGGGGTAGGCTGAGACGGGAGGGTCCTCAGCTAAAGCCAAAAGCAGATCAAAGTGGTGGGACTCGCGTCGCGGCCGCGGAGACGTGAAGCTCTCGAGGCTCCTCCCGCTCCGGGTCGGCGCTCTCCCTCGCTCTCCTCGCCCTccgccccggccccggccccgcgcCCGCCATGGAGAAGACTGAGCTGATCCAGAAGGCCAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCCACCTGCATGAAGGCGGTGACCGAGCAGGGCGCCGAGCTGTCCAACGAGGAGCGCAACCTGCTCTCCGTGGCCTACAAGAACGTGGTCGGGGGCCGCAGGTCCGCCTGGAGGGTCATCTCGAGCATCGAGCAGAAGACCGACACCTCCGACAAGAAGTTGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCCGAGCTGAGATCCATCTGCACCACGGTCCTGGAATTGTTGGATAAATATTTAATAGCCAATGCAACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGTGATTACTTCCGGTACCTTGCTGAAGTTGCATGTGGTGATGATCGAAAACaAACGATAGATAATTCCCAAGGAGCTTACCAAGAGGCATTTGATATAAGCAAGAAAGAGATGCAACCCACACACCCAATCCGCCTGGGGCTTGCTcttaacttttctgtattttactaTGAGATTCTTAATAACCCAGAGCTTGCCTGCACGCTGGCTAAAACGGCTTTTGATGAGGCCATTGCTGAACTTGATACACTGAATGAAGACTCATACAAAGACAGCACCCTCATCATGCAGTTGCTTAGAGACAACCTAACActttggACATCAGACAGTGCAGGAGAAGAATGTGATGCGGCAGAAGGGGCTGAAAACTAAATCCATACAGGGTgtcatccttctttccttcaagAAACCTTTTTACACATCTCCATTCCTTATTCCACTTGGATTTCCTATAGCAAAGAAACCCATTCATGTGTATGGAATCAACTGTTTATAGTCTTTTCACACTGCAGCTTTGGGAAAACTTCATTCCTTGATTTGTGTTTGTCTTGGCCTTCCTGGTGTGCAGTACTGCTGTAGAAAAGTATTAATAGCTTCATTTCATATAAACATAAGTAACTCCCAAACACTTATGTAGAGGACTAAAAATGTATCTGGTATTTAAGTAATCTGAACCAGTTCTGCAAGTGACTGTGTTTTGTATTACTGTGAAGATAAGAAAATGTAGTTAATTACAATTTAAACAGTGTTCCACATAACTTCTTAATTTCTACATTCCCTCCCTTACTCTTCAGGGGTTTCCTTTCAGTAAGCAACTTTTCCATGCTCTTAATGTATTCCTTTTTAGTAGGAATCCGGAAGTATTAGATTGAATGGAAAAGCACTTGCCATCTCTGGCTGGGGTCACAAATTGAAATGGCTCCTATATCACATAAGGAGGTCTTGTATATCTGTGGCAACAGGGAGTTTCCTTATTCACTCTTTATTTGCTGCTGTTTAAGTTGCCAACCTCCCTTCCCAATAAAAATTCACTTACACCTCCTGCCTTTGTAGTTCTGGTATTCACTTTACTATGTGATAGAAGTAGCATGTTGCTGCCAGAATACAAACATTGCTTTTGGCAAATTAAAGTGCATGTCATTTCTTAATACACTAGAAAGGGGAAATAAAGTACACAAGTCCAAGTCTAAACCTTTAGTACTTTTCCATGCAGATTTGTGCACATGTGAGAGGGTGTCCAGTTTGTCTAGTGATTGTTATTTAGAGAGTTGGACCACTATTGTGTGTTGCTAATCATTGACTGTAGTCCCAAAAAAGCCTTGTGAAAATGTTATGCCCTATGTAACAGCAgagtaacagaaaataaaattacattttataaaccATTTACTATGGCTTTGTAACAATTGCATACCCATATTTTAAGGGACAGGTGAATTTACTACTTTCTAAAGTTTATTGATACTTCccttttatgtaaaatgtagtaGTGATACCTATATTTCTGCATTGTGCATTGTGACACACTTGTCTAGGGATGCCTGGAAATGTATAAAATTGGACTGCATTTCTTAGAGTGTTTTACTATAGATCAGTCTCATGGGCCATCTCTTCCTCAGATGTAAATGATATCTGGTTAAGTGTTATATGGAATAAAGTGGACATTTTAAAACTA

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