Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name AGGF1P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr3:33473493-33474692  UCSC
Strand +
Parental Sequence XM_030927592.1
Parental seq. overlap 1026 bp
Parental seq. overlap (%) 22.7%
Genomic Region Intergenic
Retrocopy Summary AGGF1P1, located on chr3:33473493-33474692, is a retrocopy of the parental gene AGGF1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name AGGF1
Full Name N/A
Also known as AGGF1
Coordinate chr3:65542934-65575276
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens AGGF1P3
Chimpanzee Pan troglodytes AGGF1P2
Bonobo Pan paniscus AGGF1P1
Orangutan Pongo abelii AGGF1P1
Gibbon Nomascus leucogenys AGGF1P1
Green monkey Chlorocebus sabaeus AGGF1P1
Rhesus Macaca mulatta AGGF1P1
Marmoset Callithrix jacchus AGGF1P2
Gorilla Gorilla gorilla Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>AGGF1P1
GGGAGCTCCGCACGCAGCTGGAAGAACTCAGTAACGCACTCCGCTGTGGGAGAAATGGAGGTAATAAAAGTCTGGTGTAGAGAAGTACTCACAGAGAACCCTGCTCCTTGGTCAATCTCAGATTATTATTGTCAGACCTACTCTAATGATGTTAGTCTTCCAAATAAAGTGAGTGACTGAACTGTCAAATCAGCAAGATCAGGATATCAAAACTCCTTATCTTATGACATGCACCCTGGCAGTGATAGCTGTGTCAGATGTGAACCAGGGCAGGTTAGAGCTCACCTTTTCCTTGATCAGAAAGATGAATCATTTGTTGGTCCAACATTAACTAAGAAGGAAATGagttggaaagaagaaaaggatttttaaaatatatgagtaAAATATGGTTTACAGAATACAGACTACGAAAATAAGATATTGGAGAATCTAAAATGTAAAGATAGAGCTGGAAAACATAGGAGCAGATTGGAAGTGAAGGAAATTTCCAAAGAGATGATGCTCCTGCATCTGTTCATTCTGAAATTACTGACAGCGACAAAAATCAGAAGACGTTGAAAAAGATGTGTTGAAAACAGGAGAAGGCCTAGGGAACGATGGTGGGAGAATAAAAACTCCGATACAGCTTCAGCTTCGGCAAACACATGCAGATTGGAGACAGATAAACCATCCTGAATTAAAGAGACTCACCTTCTCCAAAACAAGAACAGGAACAACAAATGGGAAAAGCACAGCAGAGGTTTGCTGAACACTTTCCAGAAACTGAACTTCCAAAAGATGACCTAGGAACCACTCCTTGGGTAAAAGGGACTGAGAGTGAAGGTTAATCATAGAAGAAAActcaagcttttttaaaaatggagtttgGAAACTCTTATTTTATTGCAGAACGTTTCTCCCCCAAAAAGTCAGTGGCACAAGAAAACTGTGTCACAGTTTACCCCTTCCTGATTCAGAAATGTGTAGTAAAGAGTGGTTTGcagcttttaaaaaacactttttaaacgAATTATTAGTGACTGAATTAAGTTATACAGTAAGTGAACTAAATAGGGCACAGATAAGTTTATCAAACTTTACTATTTTATCTTGTCATTTACAACATCCATATAAGCAATTAGCCATATAAGCAAAATTCATATAGCCACTTAAATGTACATTTGTCCTTGTCTCCATATATTCATACTAAGATGCACA
>XM_030927592.1
CTGTTCCGTCTTGGCCCCGCCTACCGCTGGCGCCGTTGTTTCCGGCTCAACTGGGGAGCTGCCAGAACGCTTCTGGTCCCTGGTTTTCTGGACACTGGTTTTCCGGCTGCTTATCCTACGCTCTTCCCTGTTTCTGTAGCTGGAGAAGGTAGTTTCCAGTAAAGTTTTCCGGTTTCCAGGCCGCGCACATCGGGCAGGGGCCATCCTCAGTCCCTTTGCTCGTTGCCCGCAGCCCCGTTCGGCTACAAGTGAGTTTCAGGGCGTCATGGCCAGGGGCCACCGCGGCCGGCCGGGTGTGAGGCTGCCTTTCGCTGCCCGCTCGCTCCCGTGGCCTCTGGGTCCGTGGGCGTCCGTTTCGGCCTGAACGCGGCCCCTCCGCGGCAACAAGCAGTCTCGCGCCGGACCTCATGGCCTCGGAGGCGCAGTCCCCGTCGCCGCCCACCTCCCCTGAGCCTGAGCTGGCCCAGCTAAGGCGGAAGGTGGAGAAGTTGGAACGTGAACTGCGGAGCTGCAAGCGGCAGGTGCGGGAGATCGAGAAGCTGCTGCATCACACAGAACGGCTGTACCAGAACGCAGAAAGCAACAACCAGGAGCTCCGCACGCAGGTGGAAGAACTCAGTAAAATACTCCAACGTGGgagaaatgaagataataaaaagtCTGATGTAGAAGTACAAACAGAGAACCATGCTCCTTGGTCAATCTCAGATTATTATTATCAGACATACTACAATGATGTTAGTCTTCCAGGTAAAGTGACTGAACTGTCAGATCAACAAGATCAAGATATCGAAACTTATACTTTGAATTCTAAAGACCatttacaaatagaaaatgaTGCTTACCCTGGTactgataaaacagaaaatgttaaatgtagACAAGTGGACCATTTTGCCTCAAATTCACAGGAACCAGCATCTGCATTAGCAACAGAAGATACATCCTTAGAAGGTTCATCATTAGCTGAAAGTTTGAGAGCTGCAGCAGAAGCGGCTGTGTCACAGACTGGATTTAGTTATGATGAAAATACTGGACTGTATTTTGACCACAGCACTGGTTTCTATTATGATTCTGAAAATCAACTGTATTATGATCCTTCCACTGGAATTTATTACTATTGTGATGTGGAAAGTGGTCGTTACCAGTTTCATTCTCGAGTAGATTTGCAACCTTATCAGACTTCTAGCACAAAACaaagtaaagataaaaaattgaagaagaaaagaaaagatccagATTCTTCTGCAACAAATGAGGAAAAGgatttgaattcagagGATCAAAAAACCTTCAGTGTTGAACATACAAGCTGcaatgaggaagaaaatattgCGAATATGAAAAAGAAGGCGAAAATAGGCATTCATCACAAAAATAGTCCCCCCAAATTCACTGTTTCAGCTAGTGGAAATACTGTAGAGTCTCCTCTTCATGAAAACATCTCTAATTCAACAtcatttaaagatgagaaaatcatGGAGACTGATAGTGAACCAGAGGAAGGTGAAATTACAGATTCTCAGACTGAGGATAGTTATGACGAAGACATTACCAGTGAAGGCAATGTAACTGCAGAAGATAGTGAGGATGAAGATGAAGACAAAATTTGGCCCCCATGTATTAGAGTAATTGTCATTAGATCACCTGTGTTGCAGACAGGATCACTCTTTATCATTACTGCTGTAAACCCTGCTACAATTGGAAGAGAAAAGGATATGGAGCATACTCTCCGAATCCCTGAAGTTGGTGTCAGTAAGtttcatgcagaaatttattttgacCATGACTTACAAAGTTATGTCCTTGTGGATCAAGGCAGTCAAAATGGCACAGTTGTTAATGGAAAACAGATTCTTCAGCCGAAAACTAAATGTGACCCTTATGTACTTGAGCATGGAGATGAAGTGAAAATTGGAGAAACTGTCTTATCCTTTCACATTCACCCTGGCAGTGATACCTGTGATGGCTGTGAACCAGGGCAGGTTAGAGCCCACCTTCGCCTTGATAAGAAAGATGAATCTTTTGttggtCCAACACTAAGTAAGGAGGAAAAAGagttggaaagaagaaaagaattaaagaaaatacgAGTAAAATATGGTTTACAGAATACCGAATACGAAGATGAAAAGACATTGAAGAATCCAAAATATAAAGATAGAGCTGGAAAACGTAGGGAGGAGATTGGCAGTGAAGGAACTTTCCAAAGAGATGATGCTCCTGCATCTGTTCATTCTGAAATTACTGATAGCAACAAAGGTCGGAAGATGTTGGAGAAGATGGGCTGGAAGAAAGGAGAGGGCTTGGGGAAGGATGGTGGAGGAATGAAAACTCCGATCCAGCTTCAGCTTCGGCGAACACATGCAGGCTTGGGGACAGGCAAACCATCCTCAATTGAAGATGTTCACCTTCtccaaaacaagaacaaaaaaaactgGGACAAAGCACGAGAGCGGTTTACTGAAAACTTCCCAGAAACTAAGCCTCAAAAAGATGACCCAGGGACCATGCCTTGGGTAAAAGGGACTTTAGAGTGAAGGTTAATCATAGAAGAAAACtctagcttttttaaaaatagaatttggaaactcttattttttctccccaaaagaaTCAGCAGCACGGGGGAACTGTGTCACAGTTTACCTCTTCCTGATTCAGAAATGTGTATGGTTTGCagcttttaaaaaccattttttacAAACGAATAAATAGTGACTGAACCAATTTATGCAGTAAATAGACTAAAGTTCACAGGACACGGATGAGTTTATCCAACTTCGTTATTTTATCTTGTCATTTACAACATCCATATAAGCAACTAGCCATATACGCAAAATTCATGTAACTACTGACTTAAATGTACATCTACCTGTTCTTGTCTCCAGATATTCATGTAAgatgcacaacaaaagaaacatcaaaagtttataaaaataaatctgactatATGCATCCTCATTTATGCCCTTTAGAACCTAGATTAAAAATGTTGAGAAGACATGGGTAGTGGCGCATACATTTTGTTATCCTTGAAAGAAATAGCCTAAGTAATATTATTGAAGAACTAATGAACAGGTAACATGTTGTAGAAAATTAgtctttcattgttttcttctgtgaagAATCTGTTGCTATGTACTATATATTCAGCATTTATATTTGGTTTCATAGCTAATGAGGTATTTAGATATGAACCACTGAATACATATTGAAATAGTGTGCTGGCATTTGTAGTTTTGATAAAGACCATTGCAGGCAATGGAATTGTGCCAGAGAAATCTGATTTCTAGTACAAAAGGAATACTTAGTCAGGGCCTCAAGCTCAAAATACTTATTGAAAACGTCctcaattgcaataaaaacattATAACATGAAAAAGAGTGGTTTGTTGAACCAGTGATTTAAATGTATTGATCTGCTTTGCCAGAATTTTCTAGTTTAAATTGGCAGAATTATGACAAAGGGGAGCCTCAAATATTAGACAGTTGCAGTGCGGCTTGCTGGGTGCAGGTGTCACTGCTCTGCCACTTATCACCGTTCTGTTCAGTTTTTCTCTCGGGTGTTTGCTGGGAAGTTAACACTGGAACTGACCCTTTTCCGGCAGTGAATGTAAGCTCTAGCTCCCCCaactactataaagaaatgtcTTCAAGATGTAGAAATGagaaatattctgaaaataaaaatgatacagtagtaaagataattcagaaagaaaaagctaCCTGTTAGAATTTCCAGTCTAAATGGCACAGGGTAGTTAGAAAGGGggttggagaaaaagaaactatgaCTAAAGATGAGAGATATGAACGAGTTGTCAAGTTCCTATGGGCTTAAGCTAGGACAATCAGGCCCTAAACTCCAAATTTGGataaaatatctctttgcatTCCTCTTGGCCACGTGCATAGTCTGACACATACGTATGTACAATTAGACTTGCAGGCCGCAGGAGTGCCctgcattgttttcttttaattagaaataaaaagtactaGTCTAAATGTGGTTCTGGTGCTGGTGCCCTGTTTATATGTAACAATACAAGACACCCCCGAATAGGTTTTGCTTCTGGTGAATCTTGGTCACTGGGTTAGTATATGACTGTctataatgttttccatttgtattattatattggggacaacattttttatcattttctattaagaaaatggaaaacgtAAATATGGtgtagaaaatggaaatatatgtgatatttgtATTATTAAACCCCTTTGCAGATCTAAAGTCTCAGGGTTCCACTATTAGTGGTTAAAGTATTGAATAACGTCTGGATCtatttccatctgtaaaataagaatatttgtcTCACGTGTCTGTCGTGAAtagcaaatgagaaaatgtatataaaagcaCTGTGTAAATTGTAAAAGTAGTACAGATGTTAGCTTCTATTTGTTTAGAAGCATAAATGTGAATTATGTACAGTTTGAATTATGCATAAA

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