Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name CTBP2P5
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr15:14487576-14489587  UCSC
Strand +
Parental Sequence XM_030940085.1
Parental seq. overlap 1806 bp
Parental seq. overlap (%) 68%
Genomic Region Intergenic
Retrocopy Summary CTBP2P5, located on chr15:14487576-14489587, is a retrocopy of the parental gene CTBP2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CTBP2
Full Name N/A
Also known as CTBP2
Coordinate chr11:44853657-45092814
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CTBP2P6
Chimpanzee Pan troglodytes CTBP2P5
Bonobo Pan paniscus LOC100983301P4
Gorilla Gorilla gorilla CTBP2P6
Orangutan Pongo abelii CTBP2P5
Gibbon Nomascus leucogenys CTBP2P8
Green monkey Chlorocebus sabaeus CTBP2P1
Crab-eating macaque Macaca fascicularis CTBP2P3
Rhesus Macaca mulatta CTBP2P3
Baboon Papio anubis CTBP2P2
Marmoset Callithrix jacchus CTBP2P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CTBP2P5
ATTCATAGTGGTATCATGCACTCAGACTCCTGCGAGTTCCCCTAAGTTCTCAGAGGACTGTTTTGCCTTTTGATCTAATAATTGCAAAGTTCATAAAGAATGGCCCTTGTGGATAAGCACAAAGTCAAGAGACAGAGATTGGACAGAATTTGCGAAGGTATCATGAATGGACCCCGGCACTCCCACCCCTGGTGGTGCTGCTGCATGGCGGACATTGCACCGCGGCCTAAGAACCTGACAACCATGGTCTTCTGTGACGTGCAGTCCTTACAGGAAATCCACGAGACAGTTTTAAATGAAGCTGTGGGTACCATGATGTACCACACCATCACCCTCACCAGGGAGAACCTGGAAAAGTTCAAGGCCCTGAGAGTCATTGTGCAGATAGGCAGTGGCAAAGACAATGTGGACATCAAGACTGCTGCGAGTTTGGAATTGCTGTGTGCAACATCCCGTCCGGAGCCGTGGAAGAGAAGGCCGACTCCACCGTCTGCCACATCCTCAGTCTGTACTGGAGGAACACGTgggtgtgccaggcactgcaggaAGGCACGTGAGTTCAAAGCATGGAGCAGATCCACGACGTGGCCTCAGGAGCGGTCCGCATCCCTGGGTAGGCACTGTGGGTCTCATGAGCTTTGGTCGCACGGGGCAGGCGGTTGCAGTTCAAGCCAAGGCCTTTGGATTCAGAGTCATATTTTATGACCCCTACTTGCAGGATGAGATAGAATGGTCCCTGGGCATTCAGAAGGTCTACACCCTGCAGGAATTGCTGTGTCAGAGTGACTGCGTCTCCTTGCACTGCAATCTCAATGAATATAACCACCACCTCATCAACGACTTTACTATAAAGCAGATGAGGCAGGGAGCATTCCTTGTGAACGCAGCCCGTGGTGGCCTGGTGGGTGAGAAAGCCTTAGCACAGACCCTCAAGGAGGGCAAGATACGAGGGACAACTTTGCTCAGGGTCCATTGAAAGATACCCTAAATCTCATCTGCATTCCTCACACTGCCTGGTATAACGAGCAGGCGTCGCTGGAGATGAAGGAGGCGGCTGCCTCTGAGATCCACCAAGCCATCAAAGTTCGCATCCCAGAAAGCTTAAGAAACTGTGTGAACAAGGAATTATTTGTCACATCAGCTCCTTGGTCAGTAGACCAGCAAACAATTCACCCTGAGCTAAATGGTGCCACATACAGATATCCGCCAGGCATCCTGAGTGTGGCTCCAGGCGGACTTCCTGCAGCCATGGAAGGGATCATCCCTGGAGGCATCCCAGTGACTCACAACTTCCCAACAGTGGCACATCCTTCCCAAGCGCCCTCTCCCAACCAGCCCACAAAACATGGGGACAATCGAGAGCATCCCAAGGAGAAATAGCAGACAATGCTGAAAAGTAATCATTCAGATGCATATGCGACCAAGAGACAGTGAAACATAGATGAACTAAGAGAAAAAGAATCTGATGGTCTTTTTAACTGATTCTGGACATATGCATCGTTGATGCTGCAGTGTTAAAACTGTAAGAGCTAGAAAGCTGAAGACGTCTTCTGCTTACAGAAGCGCTGAAAGATGAGGATGTGATTTATTAATGATCAACTTCTGTTATTGTGTGTTAAGTTTTTTATCTATGCATCAAATCACAAAGAATAAGTAGAGCGTTTTCCTTTATCAGTCCCTTGGGTAGAGCAGGTCCTGAATACCCTGCTCTAGAATGTTGCATCAGGAGttcaaacatcaaaataaaaaataaaaaatattaagaggAAATCCTCATTCTGTGACTCTAGTTCTTTCATTCTACAGGGGCTGGTTACCTCTTCTTGCTAATAGGAAGATCACATTACTACAAAGTGGGGAGAAAACTCTTTGCCTGGGGTACACTCCTGCATGCGTAGGACTGAAGACAGTACAGGCTCCTGTACAGAGAAGAGTCTCTCACATCTGAACTGCATACTGAGCAGGCAAGTTGGTTGTAAGTTTAGTAAAACCCTCtgatgatgaaaagaaaa
>XM_030940085.1
GGTTCATAGTGGCGTCATGCACGCAGACTCCTGCGAGTTCCCTTAAGTTCTTAGAGGACTGCTTTGCCTTTTGATCTGAGAGTTGCAAAGTTCCATAAAGAATGGCCCTTGTGGATAAGCACAAAGTCAAGAGACAGCGATTGGACAGAATTTGTGAAGGTATCCGCCCCCAGATCATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCGCTGCTGGACGGCCGCGACTGCACTGTGGAGATGCCCATCCTGAAGGACCTGGCCACTGTGGCCTTCTGTGACGCGCAGTCCACACAGGAAATCCACGAGAAGGTTCTAAACGAAGCCGTGGGTGCCATGATGTACCACACCATCACCCTCACCAGGGAGGACCTGGAAAAGTTCAAGGCCCTGAGAGTGATCGTGCGGATAGGCAGTGGCTACGACAACGTGGACATCAAGGCTGCCGGCGAGCTCGGAATTGCTGTGTGCAACATCCCGTCTGCAGCCGTGGAAGAGACAGCGGACTCTACCATCTGCCACATCCTCAATCTGTACCGGAGGAACACGTGGCTGTACCAGGCACTGCGGGAAGGCACGCGGGTTCAGAGCGTGGAACAGATCCGAGAGGTGGCCTCGGGAGCGGCCCGCATCCGTGGGGAGACGCTGGGCCTCATCGGCTTTGGTCGCACGGGGCAGGCGGTTGCAGTTCGAGCCAAGGCCTTTGGATTCAGCGTCATATTTTATGACCCCTACTTGCAGGATGGGATCGAGCGGTCCCTGGGCGTGCAGAGGGTCTACACCCTGCAGGATTTGCTGTATCAGAGCGACTGCGTCTCCTTGCACTGCAATCTCAACGAACATAACCACCACCTCATCAATGACTTTACCATAAAGCAGATGAGGCAGGGAGCATTCCTTGTGAACGCAGCCCGTGGTGGCCTGGTGGACGAGAAAGCCTTAGCACAAGCCCTCAAGGAGGGCAGGATACGAGGGGCAGCCCTCGACGTGCATGAGTCGGAGCCCTTTAGCTTTGCTCAGGGTCCGTTGAAAGATGCACCGAATCTCATCTGCACTCCTCACACTGCCTGGTACAGCGAGCAGGCATCACTGGAGATGAGGGAGGCAGCTGCCACGGAGATCCGCCGAGCCATCACAGGTCGCATCCCAGAAAGCTTAAGAAACTGTGTGAACAAGGAATTCTTTGTCACATCAGCGCCTTGGTCAGTAATAGACCAGCAAGCAATTCATCCTGAGCTCAATGGTGCCACATACAGATATCCGCCAGGCATCGTGGGCGTGGCTCCAGGAGGACTTCCTGCAGCCATGGAAGGGATCATCCCTGGAGGCATCCCAGTGACTCACAACCTCCCGACAGTGGCACATCCTTCCCAAGCGCCCTCTCCCAACCAGCCCACAAAACATGGGGACAATCGAGAGCACCCCAACGAGCAATAGCAGAGAATGCCGAAAGGTAATCATTCAGATACACTTGGGACCAAGAGACAGTGAAAAATAGATGAACTGAGAGAAAAAGAATCTGATGGTCTTTGTAACTGATTCTGGACATATGCATCATTGATGTTGCAGTGTTAAAACTACAAGAGCTAGAAAACTGCAGATGTCGTCTGCTTACGGAAGCGCTGAAAGACTAGGATGTGATTTATTAACGACCAACTTCTGTTATTGTGTGTTAAGTTTTTCATCTGTGCATCAAATCACAAAGAATAAAtagagcttttttctttctcagtcccTTGGGCACAGCAGGTCCTGAACACCCTGCTCTACAATGTTGCATCAAGAgttcaaacaacaaaataaaaaatattaagaggAAATCCCCATCCTGTGACTTGAGTCCCTTAAGTCCACAGGGGCTGGAGACCTCTTTTTGCTAATAGGAAAATCACATTACTACAAAATGGGGAGAAAACTGTTTGCCTGTGGTAGACACCTGCACGCATAGGATTGAAGACAGTACAGGCTCCTGTACAGAGAAGCGTCTCTCACATCTGAACTGCATACTGAGCGGGCAAGTTGGTTGTAAGTTCAGTAAAACCCTCtgatgatgcaaaaaaaaaaaaaaaaaaaaaaaaagtattaagttTCACAAGCTGTTTgtactcaaatatattttctcagtttCAGATCCTCTGCTATTTTATTGAGTGGAAAGTCTTGAGCTAAAAGGGTTCAAGAAGAATAATGTTGCATTTCCTTATGTCTCAGGAAACACTTTTTATGGTAACTTGTCAGATTGTCTATGAACAAACCCACTTTTTTAGACATTGATAAAGTCTTCTTTTCTTCACGTGATATTTTATACAAGAACACTTCAGATGTATTAGATGTGACTGATTTTAACAAATCCTATTAGATTTGTATCAGCTAGTTCCATGTTCTGCTCATAGTCTTCTGTGAATCATtgcctttttgtttaaaaagatggcctattttgagcctgtgtatagGTACATTCCTGTTTttgtgacaaaagaaaaactttaaaattgtcccaaacagaaaaataatggcTATCAGAAGTATGTTTTGTTTTAGTGTGAGTTACCGttactgtatttgtttattgtaAAGGTGGACATTTAGCGTTCAGTGCAGTtttcaataaaaagtaattaaaatttgtTAAGTTCTGAAATTCAA

Publications

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