Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DNAJA1P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr4:161669238-161670632  UCSC
Strand -
Parental Sequence XM_030920211.1
Parental seq. overlap 1192 bp
Parental seq. overlap (%) 67.9%
Genomic Region Intergenic
Retrocopy Summary DNAJA1P1, located on chr4:161669238-161670632, is a retrocopy of the parental gene DNAJA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DNAJA1
Full Name N/A
Also known as DNAJA1
Coordinate chr16:25780896-25795907
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens DNAJA1P4
Chimpanzee Pan troglodytes DNAJA1P3
Bonobo Pan paniscus DNAJA1P3
Gorilla Gorilla gorilla DNAJA1P3
Orangutan Pongo abelii DNAJA1P4
Gibbon Nomascus leucogenys DNAJA1P1
Green monkey Chlorocebus sabaeus DNAJA1P3
Crab-eating macaque Macaca fascicularis DNAJA1P2
Rhesus Macaca mulatta DNAJA1P2
Baboon Papio anubis DNAJA1P2
Marmoset Callithrix jacchus DNAJA1P7
Mouse lemur Microcebus murinus DNAJA1P3
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DNAJA1P1
TGGTGAAAGAAACCACTTACTGTAATGGTTTGGAGGTGAGACCCAATGCCATTCAGGAAGAGTTAAGAGAGTCTTACAGGAAACTGGTCTTGAATTACTACACTGGTGAGAATTCAAATAACGAACAGAAGTGTAAACAGATTTCTTAAGCTTATGAAGTACTCTCTGAAGCaaagaaaattgaattatttgaGAAAAGAGGAGAATGGGCAATTAAAAAGGGTGAGTGGCAGTATTGGCTCCCTCACGGACATAGTTGATATGTTAtttgaaggaagaggaaggatgcagagagaaaaagaggtaaAAATATTGTGCATCAGCTCTCAGTAACCACAGAAGATGTATTTAATGGTGCAACAAGAAAACTAGCTCCATAAAATAATGTGATTTGTGACAAGTGTGTAGGCAAAGGTGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAATCACTGAAGTACTAGAATGCAAATAAGAATCATCAGATAGGACCTAGAATGGCTTAAGAATCTCAGTCTGTGTGCACGGAGTGCCAGAGCCATGGGGAGCAGAACAGTCCTAATGACAGATGTAAAAGCTGCAATGGAAGGAAGATAGTTTGAGAGAAGAAGAGCCTATAAGTTCATGACAAAGGCATGAAAGACGACCAGTAGATATCTTTCATGGTGAAGGAGATCAGGAGCCAGGAGATATTATCACTGTTTTAGATCAGAAGGACCATACTTCCTTATTCTACCAGAAGACCTTTTCATGTGTATGGACATAAAACTGGTTGAAGCACTGCATGGCTTCCAAAAGCCAATACCCACCCTTGACAACCAAATCCCAGTCAACACCTCTCATCCCCCAACTCAGATTGTCAAGCATAGAGATACTAAGTGTGTGCTAAATGAAGGTTTGACAGTTTATTGTAGATTCTATGAAAAGGATCACCTAATCGTCAAATTTAAGGTCTACTTTCCTGAGAATGCCGTTCTGTCTCCTGATAAATTCTTTTGCTATAATAACTCCTGCCTGAGAGGTAGTAAGTAAAAGAGGCTGATGAAATGGATCAAGTACATCTGGTGGACATTGACCGGTATCAGCAAGGATGGGCCATTGCAATGGAGAAATTTATGAGGATGATGAACATCATGCCAGAAGTGGTGTTCAGTGTCAAACCTCTTAATGGTGCCAGTGAATAACACTCACTGCTGGTATTACATATGCAGCAGTGAGTAAGTGAAGGACTATAACCAAATATGCTCGCTTCTtgatattgtttttgttttaatactcAATTGTAGtagtgttttaaaagttaaatgaataataaatgaaaatataaaagctcTGACTTTGCCCTAAATATATGTTGACATCAGTGTGCAAGATGAAGTTTAATATCTGTAAAAAT
>XM_030920211.1
tctggaaagtgTATGGAGTTTATCAGATTTACCAAAGACGGTGATAGTGTAATGACCAGTAAACTGAACATAACAGTGCTGCTTTTGGTTACAACTGTCACCGCCTCTAAGGGAAACGGGAAGAATCCAGGCAGAAGATGGTGAAAGAAACAACTTACTACGATGTTTTGGGGGTCAAACCCAATGCTACTCAGGAAGAATTGAAAAAGGCTTATAGGAAACTGGCCTTGAAGTACCATCCTGATAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAGTTCTCTCtgatgcaaagaaaagggaattatATGACAAAGGAGGAGAACAGGCAATTAAAGAGGGTGGAGCAGGTGGCGGTTTTGGCTCCCCCATGGACATCTTTGATATGTTttttggaggaggaggaaggatgcagagagaaaggagaggcAAAAATGTTGTACATCAGCTCTCAGTAACCCTAGAAGACTTATATAATGGTGCAACAAGAAAACTGGCTCTGCAAAAGAATGTGATTTGTGACAAATGTGAAGgtaGAGGAGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATAAGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTGCCAGGGCCATGGGGAGCGGATCAGTCCTAAAGATAGATGTAAAAGCTGCAACGGAAGGAAGATAGTTCGAGAGAAGAAGATTCTAGAAGTTCATATTGACAAAGgCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCAGGACTGGAGCCAGGCGATATTATCATTGTGTTAGATCAGAaggaccatgctgtttttacTCGACGAGGAGAAGACCTTTTCATGTGTATGGACATACAGCTGGTTGAAGCATTGTGTGGCTTTCAGAAGCCAATATCCACTCTTGACAACCGAACCATAGTCATCACCTCTCATCCAGGTCAGATTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCTAATCATCGAATTTAAGGTAAACTTTCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTCTTTGCTGGAAAAACTCCTACCTGAGAGGAAGGAAGTGGAAGAGACTGATGAGATGGATCAAGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGACGGCGCCATTACAATGGAGAAGCATATGAGGATGATGAACATCATCCCAGAGGTGGTGTTCAGTGTCAGACCTCTTAATGGGCCAGTGAATAACACTCACTGCTGGCATTTAATGTGCATTAGTGAATAAGTGAAGGACTGTAATCATAATATGCTCACTACttgctcttgtttttgttttaatattcaaCTATAgtagtgtttttaaaagttaaatgaagAATAAACGCAAATATAAAAGCTCTGACTTGGCCCTGTATGTATGATGACTTCTGTGTGCAAGATGAAGTTTAATACctgtaaaaactacaaagaagttcCCCTAGCATTTCTAGGCCAAACCTTGTAATTGACTTCAGCTATGTACGTGGACAAGCTTAGACTGAAATGCTAGGTATATGTGTTGGCTTCAGTGTATGACCCTTCTTCATTGTTAAGCTATGAAAGTAAAACTCTGTATTTAACTggcaatgaggaaaaaaaaatttgtagagaaa

Publications

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