Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name EIF2S2P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr1:129850283-129851988  UCSC
Strand +
Parental Sequence XM_010379131.2
Parental seq. overlap 1273 bp
Parental seq. overlap (%) 81.3%
Genomic Region Intragenic (EHHADH)
Retrocopy Summary EIF2S2P1, located on chr1:129850283-129851988, is a retrocopy of the parental gene EIF2S2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name EIF2S2
Full Name N/A
Also known as EIF2S2
Coordinate chr13:106373417-106396759
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens EIF2S2P2
Chimpanzee Pan troglodytes EIF2S2P3
Bonobo Pan paniscus EIF2S2P3
Gorilla Gorilla gorilla EIF2S2P4
Orangutan Pongo abelii EIF2S2P3
Gibbon Nomascus leucogenys EIF2S2P4
Crab-eating macaque Macaca fascicularis EIF2S2P4
Rhesus Macaca mulatta EIF2S2P4
Baboon Papio anubis EIF2S2P3
Marmoset Callithrix jacchus EIF2S2P7
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>EIF2S2P1
TCTGATACAAGAGCCTAGTGCAGTAGTGGGAGAGGTATTGGCAGGAGCAGCGCTGCTGCGGGGCCTGGGGGTGACCTGTCTGACTTCTTGTCCATGCTGAGCCCACTGGAGCCGCATCCATGTCTGGGGATGAGGTGATTTTTGATCCCACTatgagcaccTTTTATGTTAGATGAGGAAGGGGATACCCAAACAGAGGAAACGCAGCCTTCAGAAACAAAAGTCTGGAGCCAGAGCCAACTGAGGACAAAAATTTGGAAGCTGATGATGAGGACAGTAGGAAAAAAGATGCTTCTGATGATCTAGATGACCAGAACTTCtttaatcaatagaaaaaagaaaaaaacaaaaaagatatttgatattgATGACGCTGAAGAAGATGTAAAGGATCTTAAGATTGAAAGTGATGTTCAAGGACCAGCTGAACCAGAGCATGACCTTGACATTATGCttggcaagaaaaagaagaatgtcaAGTACCCAGATGAGGATGAAATGCTAGAAAAAGATGAAGCTCTAGAAGATGAAGACAGCAAAAAAAGATGACGATATCTCATTCAGTAATCAGACAGGCCCTGCTTGGGTAGGCTCAGAAGGAGACTACACGTAAGAGGAGCTGCTGAATCGTGTGTTCAACATCATAAGGGAAAAGAATTCAGATATGGTtgctggggagaaaaagaaattcattatgAAACCTCCGCAGGTCGTCCGAGTAGGAACCAAGAAAACTTCTTTTGTCAACTTTACAGATATCTGTAAACTATTACATCACAGCACACTTGCATTTTTGTTGGCTGAATTGGGTACAAGTGGTTCTATAGATGGTAATAACCAACTTGTAAAGGAAGATTCCAACAGAAACAGATAGAAAATGTCTTACAAAGATTTATCAAGGCATGTGTCGTTTGTCACACATGCAGATCACTGGACACAATCCTGCAGAAGGACATGCAACTCTTACTTCCTACAGTGTGAAACTTGTCATTCTAGATGTGCTGTTGCCAGTATCAAAACCTGCTTTCAGACTGTCATGGGCAAGCGAGCACAGCTCCGTGCCAAAGCTAACTAATTTGCTAAtcactgactcatcattgATTTTTCAAAGTGTGTTGTAGAGATGTGGCTAGACTGGTTTGCCATCAGAGTGGATATACCATTGTAttaaaaacaagattaaaaagcTGCCAAGTTCTTTGGCTGGTGGTTGGTTGGTCTGAAATCCTTGCAAGACACTGATGCTCAAGCTGTTGACATACTTATAGCCTACTTTAACACCTGTCAGAGAAACGTGATATGGGGTAAggaggtgctttttaaaaatcgttCATAGACTTCTGTAAAATGCAAGATAAATCAAAGTTATCataacagtga
>XM_010379131.2
GTCGCCTGGTAACTCGCGCCACACGAAGCGCGCTAGGTTGGCTCTTCTGCGCGCCTGCGCCTTGGCGAGCTCTGCGCAGGCGCATTTCCAACGCTTGGAGGAGAGGGCGGGGTGTCGTTCCCTTTCGCTGATGCAAGAGCCTAGTGCGGTGGTGGGAGAGGTATCGGCAGGAGCAGCGCTGCCGCCGGGGCCTGGGGGTGACCCGTCTGACTTCCTGTCCGTGCCGAGCCCACTCGAGCCGCAGCCATGTCTGGGGACGAGATGATTTTTGATCCTACTatgagcaagaagaaaaagaagaagaagaagccttTTATGTTAGATGAGGAAGGGGATACCCAAACAGAGGAAACCCAGCCTTCAGAAACAAAAGAAGTGGAGCCAGAGCCAACTGAGGACAAAGATTTGGAAGCTGATGAAGAGGACACTAGGAAAAAAGATGCTTCTGATGATCTAGATGACTTGAACTtctttaatcaaaagaaaaagaagaaaaaaactaaaaagatatttgatattgATGAAGCTGAAGAAGGTGTAAAGGATCTTAAGATTGAAAGTGATGTTCAAGAACCAACTGAACCAGAGGATGACCTTGACATTAtgcttggcaataaaaagaagaaaaagaagaatgttaaGTTCCCAGATGAGGATGAAATACTAGAGAAAGATGAAGCTCTAGAAGATGAAGACAGCAAAAAAGATGATGGTATCTCATTCAGTAATCAGACAGGCCCTGCTTGGGCAGGCTCAGAAAGAGACTACACATACGAGGAGctGCTGAATCGAGTATTCAACATCATGAGGGAAAAGAATCCAGATATGGTTGCtggggagaaaaggaaatttgtcATGAAACCTCCACAGGTCGTCCGAGTAGGAACCAAGAAAACTTCTTTTGTCAACTTTACAGATATCTGTAAACTattaCATCGTCAGCCCAAACATCTCCTTGCATTTTTGTTGGCTGAATTGGGTACAAGtGGTTCTATAGATGGTAATAACCAACTTGTAATCAAAGGAAGATTCCAACAGAAACAGATAGAAAATGTCTTGAGAAGATATATCAAGGAATATGTCACTTGTCACACATGCCGATCACCGGACACAATCCTACAGAAGGACACACGACTCTATTTCCTACAGTGCGAAACTTGTCATTCTAGATGTTCTGTTGCCAGCATCAAAACCGGCTTCCAGGCTGTCACGGGCAAGCGAGCACAGCTCCGTGCCAAAGCTAACTAATTTGCTAATCACTGATTTTGCAAAGCGTGTTGTGGAGATGTGGCTGGACAGGTTTGCCATCAGAGTGGATATACCGTTCTAttaaaaacaagattaaaaagcTGCCAATATTTTTGGCGACTGGTTGGTTGGTCTGAAGTCCTTGCAAGACGCTGATGTTCAAGCTGTTGACATACTCATTGCCTACTTTTAACACCTGTCAGAGAAACGTGATATGGGGTAAGGAGGTGCTTTTTTAAAATCGTTCATAGACTTCTGTAAAATGCAAGATAAATTAAAGTTATTATAACAGTGATTCTTTCAA

Publications

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