Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GM2AP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr1:111666151-111666496  UCSC
Strand -
Parental Sequence XM_010373683.2
Parental seq. overlap 301 bp
Parental seq. overlap (%) 15.2%
Genomic Region Intergenic
Retrocopy Summary GM2AP1, located on chr1:111666151-111666496, is a retrocopy of the parental gene GM2A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GM2A
Full Name N/A
Also known as GM2A
Coordinate chr3:40242737-40259234
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens GM2AP1
Chimpanzee Pan troglodytes GM2AP2
Bonobo Pan paniscus GM2AP2
Gorilla Gorilla gorilla GM2AP2
Orangutan Pongo abelii GM2AP1
Gibbon Nomascus leucogenys GM2AP1
Green monkey Chlorocebus sabaeus GM2AP1
Crab-eating macaque Macaca fascicularis GM2AP2
Rhesus Macaca mulatta GM2AP2
Baboon Papio anubis GM2AP1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GM2AP1
ACCAATGCAGGAAACCATTTAAAGGCGCCGCTGCCACCACAGACCTTGCAGTTAACTCCGCCCGGACCCACCCTTCGAACGCAATCCCTAATGCAGGCTTTGCCCCAGATCGCCCTGGGCTTGCTTCTCGCAAGCCCACCTGAAAAAACTCAGTAGTTTTTCCTGGAAACTGTGATGAAGGGAAGGACCCTGCGGTGATCAGAGGCATAACTGTGGAACCTGACCCCATCATCCTTCCTGAGAACGTGACCCTCAGTCTCCTGGGCAGCACCACTGTTCCCCTGAGTTCTCATCTGGAGATGGACTTAGTTTTGGAGAAGGAAGTGGCTGGCCTCTGGATCAAGAC
>XM_010373683.2
ATAGCAATACACAGCTTTGCGTAACCAATACAGGAAGGCATTTAAAGGCGCCTCTGCCGCCACAGACCTTGCAGTTAACTCCGCCCTGACCTACGCTTCTTAATGCAGTTCCTGATGCAGGCTCCCTTCCTGATCGCCCTGGGCTTGCTTTTCGCGGCCCCTGCGCAAGCCTACCTGAAAAAGCTCGGTAGCTTCTCCTGGGATAACTGTGATGAAGGAAAGGACCCTGCGGTGATCAGAAGCCTGACTCTGGAGCCTGACCCCATCATCATTCCTGGGAATGTGACCCTCAGTGTCGTGGGCAGCACCAGTGTTCCTCTGACTTCTCCTCTGAAGttggAATTAGTTCTGGAGAAGGAAGTGGCTAGCCTCTGGATCAAGATCCCATGCACAGACTACATTGGCAGCTGTACCTTTGAAAACTTCTGTGATGTGCTTGACATGTTAATTCCTACTGGGGAGCCCTGCCCAGAGCCCCTGCATACCTATGGGCTTCCTTGCCACTGTCCCTTCAAAGAAGGAACCTACTCACTGCCCAAGAGCGAATTTGTTTTGCCTCACCTGGAGCTGCCCAGTTGGCTCACCACCGGGAACTACCGCATAGAGAGCGTCCTAAGCAACAGTGGGAAGCGTCTGGGCTGCATCAAGATTGCTGCCTCTCTAAAGGGCATATAACGTGGCATCTGCCACAGCAGAATGGAGCAGTGTGAGGAAGGTCCCTTTTCCTCTGTTTTGTGTTTGCCAAGGCCAAACTCCCCCTCTCTGCCCCGCTTTAATCCTCTTTCTACAATGAGTCTGCTACCCTCACTGAAAATCATTTTGTGCCACTTATATTTTAGGCTGGGGCAAGCAGCCCTGACCTAAGGGAGGATGAGTTGGGCAGTTCTTGATAGCCCAGGGCATCTGCTGGGCTGACCACGTTACTCATCCCGGTTAACATTCGCTCTTTCTCTCTAAAGAGCCTCGTTCATTTCCAAAGCACTTAAGGAATGGGAACCAGAGTGTTTTAGGACCTGAAGAATCTTTataactttctctctctcactcttttttttttttgtcactaaGTTAAAAGCAAAGTGAGAGTATTAACATTTTTGTTCTCCTCCAACCCCCTGTTAAATGAAGGGGCGAAAGTATTTGCTCTTAGTCTATTCCTCCCTTAACTTCTGTGactaattttaatttcctttctagATTTTCCCAATTAATACTAGGGTGCAGTGTATCCTGGAGAGGTAGGGTGTCGGGGGGAGGAATCCCTTGGGGGAGATATTAGGGGTGCTCCGTTGTTTACAAACTCAGGTACCCGCAGGGCTTAGCAAGAGACTTAAATGAGTGACAAGAACCTTGAGAAACAAGTTGCTTCCAGGCTTGATTTcgacttttccctttttttttggagacagagtctcactttgtcaccaggctggagtgcagtggcgcaatctcagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagcttggactacaggcgcccaccatcacgcctggctaatttttgtatttttagtacagatggggtttcaccgtgttggtcaggatggtctcgatctcttgacctcatgatctgcccacttggccttggaaagtgctgaattacagttgtgagccactacgcccagctgatttttcctttttgattaaaGATACTATTacaatgtaaatatttcttatacaGAAAGTCACAGCACATGTGCCCATTGATACAAGGCCGCTGAGGCCTGGTCTCCACTTGGAAATATAATTAAGGGTGACAAGGACTGGAGTAAGTTGGAGAGTGCATAGCCAGTCTGTGAAGACAACTGCTACCTAGCTATGACCAGTCAGTGCCACACAAGAATGGTGTGGGCCCAGTATTATCAGATACTGGCAatacttcagcctggtgacagagtgagactcttgtctcaaaaaaaaa

Publications

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