Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGB3P28
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr15:44191259-44191838  UCSC
Strand -
Parental Sequence XM_010364315.2
Parental seq. overlap 454 bp
Parental seq. overlap (%) 63.8%
Genomic Region Intergenic
Retrocopy Summary HMGB3P28, located on chr15:44191259-44191838, is a retrocopy of the parental gene HMGB3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGB3
Full Name N/A
Also known as HMGB3
Coordinate chr7:137187759-137192361
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes HMGB3P16
Bonobo Pan paniscus HMGB3P15
Green monkey Chlorocebus sabaeus LOC103232983P2
Crab-eating macaque Macaca fascicularis HMGB3P20
Rhesus Macaca mulatta HMGB3P21
Baboon Papio anubis HMGB3P12
Marmoset Callithrix jacchus HMGB3P33
Human Homo sapiens Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGB3P28
GAACAATACAGTCAGGTTGCCTAAAAGTGATCCCAAGAAACCAAAGGGTCTGCTTAATACCTTCTTTGTGCACGTGTGCGGAGAAGAACATAATGAAAAACCCAGAAGTCCCTGTCAATTTTGCAAAATTTTCCAAGCAGTGCTCTGAGAAGTGGCAGACAATGTCTAGGAGAGAGAAGTTTAAATTTGATGAAGTGGCAAAGGTGGATAAAGTACTCCATGTTTGGGAAATGAAGGATTAAAGATCAGCCAAGGGAGGCAAGAAGGACTCTAATTCCCTCAAAAGGCCACCGTCTGTATTATTCCAGTTCTTTTCAGAAGTCTACCCCAAGATCAGATCCACAAACCCTGTAATCTCGATCAGAGATGTGGCACAAAAGCTGGTGAGATGTGGAATAACTTAAGTAACGGTGAAATGCAACCTTGCATCAGTAAAGCGGCAAAGCTGAGGGAGAAGCTTTAGAAAGATGTTGCTGACTGTAAGTCTAAAGGAAAGTTTGGTGATGCAAAGAATCCCACTAAAGTTGCCCAGAAAAGAtggc
>XM_010364315.2
CTCTCGTGGAGGCAGCTAGCGCGAGGCTGGGGAGCGCTGAGCCGCGCGTCGTGCCTTGCGCTGCCCAGACTAGCGAACAATACAGTCAGGATGGCTAAAGGTGACCCGAAGAAACCAAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAAGAACATAAGAAGAAAAACCCGGAGGTCCCTGTGAACTTTGCAGAATTTTCCAAGAAGTGCTCTGAGAGGTGgaagACGATGTCCGGGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGACCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATTCCGTCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGACGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATTTAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCAGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCCGACTATAAGTCAAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAAggtggaagaggaagatgaagaagaggaggaggaagaagaggaggaggaggaggaggaggatgaataaagaaactgttgATCTGTC

Publications

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