Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGN1P35
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr15:91016756-91017809  UCSC
Strand -
Parental Sequence XM_030915499.1
Parental seq. overlap 913 bp
Parental seq. overlap (%) 72.3%
Genomic Region Intergenic
Retrocopy Summary HMGN1P35, located on chr15:91016756-91017809, is a retrocopy of the parental gene HMGN1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGN1
Full Name N/A
Also known as HMGN1
Coordinate chr13:54629707-54636642
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGN1P42
Chimpanzee Pan troglodytes HMGN1P18
Bonobo Pan paniscus HMGN1P17
Orangutan Pongo abelii HMGN1P19
Gibbon Nomascus leucogenys HMGN1P27
Green monkey Chlorocebus sabaeus HMGN1P2
Crab-eating macaque Macaca fascicularis HMGN1P32
Rhesus Macaca mulatta HMGN1P33
Baboon Papio anubis HMGN1P30
Marmoset Callithrix jacchus HMGN1P18
Gorilla Gorilla gorilla Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGN1P35
GCCGAAGGGGCAGCCAAGGAAGAGCCCAAGAGGGGATCCGCGCGGTTTTCAGCTAAATCCGCTCCTGCAAAAGTGGAAACGAAGCCAAAAAGGCAGCAGGAAAGGACACATCTTCAGACAAAAAAAGtgcaaacaaaagagaaaaggggagCAAAGAGAAAACAGGCCAAGTGGCTAACCAAGAAACTAAAGAACATCTACCTGCAGAAAATGGGGAAACTAAAATCGGAGAGAGCTCAGCCTCTGATGACGCCAGAAAGAAAGAAGCCCGGTCTGATTAACATAGCATGTACCCTGTCTTAGCGGCCCCTGTCTCCCTGCTTGTACAATCCAGAAGAGTATTTTTATCAACTATTTCGTAAATGCAAGTTTTTTAGTAACTCTAGAAACGTTTTTAAGGAGGGAATCCCACCTCATCCCATTTTTTAAGCATATGCTTTTTAAGAGGTAAAGTCATTCGCTGGTTTATTTTTTGATACGACCAGAAGATAGTGTGGGATATTGAATTATGAGAGGCTTTGACTGTCTTGGGTGTTAGATGGGGGGTTAGTttttatatactataatataaCGCATACTGAATGGCAACATAGAGTCACAGTCCTGCATTTACTGTCTTGgacattttaaattacttctaGTGCCATGTTGTTTTTCAGTAGAATTGTTTCCTGAAGAAAGCTAGCCCTTGAACATGGCTCTCCCTGTCAGAATTGTGTGCACTCTGTACCATCTTTGGTCACAGTCCTGTTTCCCTAATAACTTTGTTCATGTGCTGTGGAAGATTGAAAATTTGAGTATGTGGTATATATGCTATACAATTTTGAATTGGTGGGACTATGTAACAGTTGAATGTGAAGATAGTGGTATTTGATAGCCTCTTAAGGAAAAATTGCCTCCAAATTTTAAGCTGGAAAATCACTGGAACAACTTTAAAAAGGAATTACAATAATGACTTTTTAGATTGTTGGTATGTATGTTAAGAATTGTGTACAAATTGAAATGTCTGTGTACTGATCCTTAATGCAAACAATAAAATctcaattatgaaag
>XM_030915499.1
GTTCTCCCACCGCCCCCGCTGTGGGTCTCAGCAGCTCGGGCGGCGGGAGGAGTGGCAGCGGCCAGGCAGCCTAGTTTCGCGAAGGCTCTCGGCGCGCCGCGGCCCGCAGGCACCCGGCACGCGCCTTCCCCGCCGCCAGGATGCCCAAGAGGAAGGTCAGCTCCGCCGAAGGGGCCGCCAAGGAAGAGcCCAAGAGGAGATCGGCGCGGTTGTCAGCTAAACCTCCTGCCAAAGTGGAAGCGAAGCCGAAAAAGGCAGCAGCGAAGGATAAATCTTCAGACAAAAAAGtgcaaacaaaagggaaaaggggAGCAAAGGGAAAACAGGCCGAAGTGGCTAACCAAGAAACGAAAGAAGATTTACCCGCAGAAAACGGTGAAACGAAAACTGAGGAGaGTCCAGCCTCTGAcgaagcaggagagaaagaagccaaGTCTGATTAGTACATACACCATGTCTTACCAGTGGTCCCCGTCTCCCTTCTTGTACAATCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCAAGTTTTTTAGTAGctctagaaacatttttaagaaggaGGGAATCCCACCTCATCccattttttaagtgtaaatgcttttttttaagaggtgaaaTCATTtgctggttgtttattttttggtacaACCAGAAAATAGTGTGGGATGTTGAATTACGGGAGGCTTTGACTGTCTCGGGTGCCAGCTTAACATTCCATAGATGGGGGTTAGTTTTTATATTCTATAATACAAAGCATATTAAATGGCAATATGGAGTCAGTCCTGCATTTAATgtcttgaatattttattttacttctattctcatgttttttagtagaattgTTTCCAAAAGAAAACCACTCCTTGATCATGGCGCTCCCTGTCAGAATTGTGTGCACTCTGTAACATCTTTGGTTGTGGTAGTCCTGTTTTCCTAATAACTTTGTTACTGTGCTGTGAAAGATTACAGATTTGAATATGTAGTGTACATGCTATTCAGTTGTGAACTGGTGGGCCATATGTAACAACTGACCAACATGTGAAGAAACTGGTACTTGATAGCCTCTTAAGGAAaatttgcttccaaattttaAGCTGGAAAGTCACtggaataactttaaaaaagaattacaatacATGGCTTTTTAGAATTTCGTTACATATGTTAAGAATTGTGTACAAATTGAAATGTCTGTACTGATCCTCAACCAATAAAATctcaattatgaaaata

Publications

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