Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPA1P29
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr5:173192950-173194615  UCSC
Strand +
Parental Sequence XM_010373867.1
Parental seq. overlap 1226 bp
Parental seq. overlap (%) 59.1%
Genomic Region Intergenic
Retrocopy Summary HNRNPA1P29, located on chr5:173192950-173194615, is a retrocopy of the parental gene HNRNPA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HNRNPA1
Full Name N/A
Also known as HNRNPA1
Coordinate chr10:56808370-56814887
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HNRNPA1P44
Chimpanzee Pan troglodytes HNRNPA1P71
Bonobo Pan paniscus HNRNPA1P70
Gorilla Gorilla gorilla HNRNPA1P64
Orangutan Pongo abelii HNRNPA1P69
Gibbon Nomascus leucogenys HNRNPA1P13
Green monkey Chlorocebus sabaeus HNRNPA1P77
Crab-eating macaque Macaca fascicularis HNRNPA1P36
Rhesus Macaca mulatta HNRNPA1P37
Baboon Papio anubis HNRNPA1P28
Marmoset Callithrix jacchus LOC100413454P18
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPA1P29
GAGCATCATTAAAGTCGCTCTTCACCCTGCTGTCATGTCTAAGGTGGAGTTTCCTGAAGAACTGGAACAGCTGAGGAAGCTCTTCATTGGAGGCTGAACTTTGAAACAACCAATGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACACTCACGGACTGTGTGGTCATGAGAGATCCAAGTACCAAGCGCTCCAGGGGCcttgggtttgtcacatatgccACTGTGGAGGAGGTGGATGCAGCCGCGAATGCAAGGCCACACAAGGTGGATGGAAGAGCTGTGGAAACAAAGAGAGCTGTCTCAAGAGGAGATTCTCAAAGACCCAGTGCCCACTTAactgtgaaaaagatatttgttggGGTCGTTAAAGAAGACACAGGCCgacactgaagaacTGCACCTAAAAGATTATTTTGAACAGTATGGAAAAATTGAAGTGATTGAAATTATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTATAACCTTTGATGACCATGACTCCGTGGATAAGACTGTCATTCAGAAATACCATACTGTGAATGGCCACAATGGTGAAGTTAGGAAAGCCCTGTCACACCAAGAGATGGCTAGTGCTTCAGCCAGCCAGCCACAGAGGTCAAAGTGGCTCTGGAAACTTTGGTGGTGGTCATGGAGGTAGTTTTGGTGGGAATGACAACTTTGGTCATGGAGGAAACTTAAGTGGTCGTGGAGGAAACTTAAGCGGCTTTAATGgcagctgtggtggtggtggtgaatatggtggcagtggggatgCTATAATGGATTTGGTAATGATGTAAGCAATTTTGGGGGTGGTGGAAGCTACAGTGATTTTGGTAATTACAACAATCAGTCTTCAAATTGCGGACCCACGAAGGGAAGAAACTTTGGAGGCAGAAGCTCTGGCCCCTATGGTGATGGAGGCCAATACTTTGCCCAACTACGAAACCAAGGTGGCTATGGCGATTCCAGTAGCAGCAGTAGCTATGGCAgtggcagaagattttaattaggaaaaaaagctTAGCAGGAGAGGAGAGCCAGAGAAGTGACCCAATGGAGCTACAGGTTACAATAGATTCATGAactcagccaagcacagtggtggtAGGGTCTAGCTGCTACaaagaagacatgttttagacaaatactcatgtgaatgggcaaaaaactcAAGGACTGTATTTGTGACTAATTATGTATAACAgcttattttagtttctgttctgtggaaagtataaagcattccaacaaagggttttaatgtagttttttttttttcgcacCCATGCTGTTGATTGCTAAATGTAATAGTCTGCTTATGACtctcaataaatgtgtt
>XM_010373867.1
AATGTGGCACCACAGGCCAATAGTAAGGGGAAGCGATTTCAAATGTCCAATCAGAGCTGTTCCAGGGCGGAGTCTACCAATGCCGAAAGCGAGGAGGCGGGGTAAAAAAGAGAGGCCGAAGGTAGGCTGGCAGATACGTTCGTCAGCTTGCTCCTTTCTGCCCGTGGACGCCGCCGAAGAAGCATCGTTAAagtctctcttctccctgccGTCATGTCTAAGTCAGAGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACAGATGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGTTCCaggggctttgggtttgtcacatatgccACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGACGGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCAAGAGAAGATTCTCAAAGACCAGGTGCCCACTTAactgtgaaaaagatatttgttggtggcattaaagaagacactgaagaacatcacctaagagattattttgaacagTATGGGAAAATTGAAGTGATTGAAATCATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGACGACCATGACTCCGTGGATAAGATCGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTTAGGAAAGCCCTGTCAAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTCGGTGGGAATGACAACTTCGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGAtatggtggcagtggggatggctaTAATGGATTTGGTAATGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGCCAATACTTTGCAAAACCACGAAACCAAGGTGGCTATGGCGgttccagcagcagcagtagctatggcagtggcagaagattttaattagGAAACAAAGCTTAGCAGGAGAGGAGAGccagagaagtgacagggaagctacaggttacaacagatttgtgaactcagccaagcacagtggtggcagggcctagctgctacaaagaagacatgttttagacaaatactcatgtgtatgggcaaaaaactcgaggactgtatttgtgactaattgtataacaggttattttagtttctgttctgtggaaagtgtaaagcattccaacaaagggttttaatgtagattttttttttttgcacccatgCTGTTGATTGCTAAATGTAATAGTCTGATCGTGAcgctgaataaatgtcttttttttaatgtgctgtgtaAAGTTAGTCTACTCTGAAGCCATCTTGGTGAATTTCCCCAACAGTGTGAAGTTAGAATTCCTTCAGGGTGATGCCAGGTTCTATTTGGAATTTATATACAACCTGCTTGGGTGGAGAAGCCATTGTCTTCGGAAACCTTGGTGTAGTTGAACTGATAGTTACTGTTGTGACCTGAAGTTCACCATTAAAAGGGATTACCCAAGCAAAATCATGGAATTACTGGTTATAAAAGTGATTGTTGGCACATCCTATGCAATATATCTAAATTGAATAATGGTACCAGATAAAATTATAGATGGGAATGAAGCTTGTGTATCATCCATTATCATGTGTAATCAATAAACGATTTAATTCTCTTGAA

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