Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPA1P36
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr7:47069016-47069555  UCSC
Strand +
Parental Sequence XM_010373867.1
Parental seq. overlap 481 bp
Parental seq. overlap (%) 23.6%
Genomic Region Intragenic (SLC16A2)
Retrocopy Summary HNRNPA1P36, located on chr7:47069016-47069555, is a retrocopy of the parental gene HNRNPA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HNRNPA1
Full Name N/A
Also known as HNRNPA1
Coordinate chr10:56808370-56814887
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HNRNPA1P25
Chimpanzee Pan troglodytes HNRNPA1P83
Bonobo Pan paniscus HNRNPA1P81
Gorilla Gorilla gorilla HNRNPA1P77
Orangutan Pongo abelii HNRNPA1P79
Baboon Papio anubis LOC110742258P21
Dolphin Tursiops truncatus HNRNPA1P7
Dog Canis familiaris HNRNPA1P75
Pale spear-nosed bat Phyllostomus discolor HNRNPA1P15
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPA1P36
ATGGAAGTAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAACTTTGGAGGCAGAAGCTCTGGCCCCTATGGTGGTGGAGGCCAATACTTTGCCAAACCACAAAACCAAGGTGGCTATGGTGGTTCCAgattttaattaggaaacaaaGCTTAGTAGGAGAGGAGAGCCAGAGAAGTGGCAGGGAAGCTACAGGTTACAACGGATTTGTGAAtttagccaagcacagtggtggcaGGGCCTAACTGCTACAAAGCAGATATGTTTTAGACAAATACTCATATGTATGGGAAAAAAACTCAAGGATTGTATTTGTGACTGATTGTATAACATGTTATTTAGTTTCTGTTCCGTGGAAAGCGTAAAGCATTCCAACCAAGGGttttaaggtagttttttttttgcacccatgctgttaattgctaaatgtaatagtctgattatgatgctgaataaatgtcttttttttaa
>XM_010373867.1
AATGTGGCACCACAGGCCAATAGTAAGGGGAAGCGATTTCAAATGTCCAATCAGAGCTGTTCCAGGGCGGAGTCTACCAATGCCGAAAGCGAGGAGGCGGGGTAAAAAAGAGAGGCCGAAGGTAGGCTGGCAGATACGTTCGTCAGCTTGCTCCTTTCTGCCCGTGGACGCCGCCGAAGAAGCATCGTTAAagtctctcttctccctgccGTCATGTCTAAGTCAGAGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACAGATGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGTTCCaggggctttgggtttgtcacatatgccACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGACGGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCAAGAGAAGATTCTCAAAGACCAGGTGCCCACTTAactgtgaaaaagatatttgttggtggcattaaagaagacactgaagaacatcacctaagagattattttgaacagTATGGGAAAATTGAAGTGATTGAAATCATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGACGACCATGACTCCGTGGATAAGATCGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTTAGGAAAGCCCTGTCAAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTCGGTGGGAATGACAACTTCGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGAtatggtggcagtggggatggctaTAATGGATTTGGTAATGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGCCAATACTTTGCAAAACCACGAAACCAAGGTGGCTATGGCGgttccagcagcagcagtagctatggcagtggcagaagattttaattagGAAACAAAGCTTAGCAGGAGAGGAGAGccagagaagtgacagggaagctacaggttacaacagatttgtgaactcagccaagcacagtggtggcagggcctagctgctacaaagaagacatgttttagacaaatactcatgtgtatgggcaaaaaactcgaggactgtatttgtgactaattgtataacaggttattttagtttctgttctgtggaaagtgtaaagcattccaacaaagggttttaatgtagattttttttttttgcacccatgCTGTTGATTGCTAAATGTAATAGTCTGATCGTGAcgctgaataaatgtcttttttttaatgtgctgtgtaAAGTTAGTCTACTCTGAAGCCATCTTGGTGAATTTCCCCAACAGTGTGAAGTTAGAATTCCTTCAGGGTGATGCCAGGTTCTATTTGGAATTTATATACAACCTGCTTGGGTGGAGAAGCCATTGTCTTCGGAAACCTTGGTGTAGTTGAACTGATAGTTACTGTTGTGACCTGAAGTTCACCATTAAAAGGGATTACCCAAGCAAAATCATGGAATTACTGGTTATAAAAGTGATTGTTGGCACATCCTATGCAATATATCTAAATTGAATAATGGTACCAGATAAAATTATAGATGGGAATGAAGCTTGTGTATCATCCATTATCATGTGTAATCAATAAACGATTTAATTCTCTTGAA

Publications

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