Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27AP10
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr8:54926452-54926806  UCSC
Strand -
Parental Sequence XM_005575860.2
Parental seq. overlap 304 bp
Parental seq. overlap (%) 36.5%
Genomic Region Intragenic (RGS20)
Retrocopy Summary RPS27AP10, located on chr8:54926452-54926806, is a retrocopy of the parental gene RPS27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27A
Full Name N/A
Also known as -
Coordinate chr13:54791456-54794612
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS27AP13
Chimpanzee Pan troglodytes RPS27AP11
Bonobo Pan paniscus RPS27AP11
Gorilla Gorilla gorilla RPS27AP12
Orangutan Pongo abelii RPS27AP12
Gibbon Nomascus leucogenys RPS27AP16
Green monkey Chlorocebus sabaeus RPS27AP7
Rhesus Macaca mulatta RPS27AP10
Baboon Papio anubis RPS27AP9
Golden snub-nosed monkey Rhinopithecus roxellana LOC104673976P12
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27AP10
GCTGGCAAGTAACTGGAATATGGACATACTTTCTCTGACTACAACATTCAAAAAGAATCTACTCTTTTTATCTTGTGCTGAGACTTCATGGTAGTGCCAAAAATAGGAAGAAATCTTATCCAACTCCCAGGAATAAGCATAAGAGAAAGAAGGTGAAGTGGGTGTCCTGAAATACTATAAGGTGGATGAAAATGCCAGAATTAGTGGCCTTCATTGGGAGTGCCTTTCAGATGAATGTGGTGCTGGAGTTTTTATGGCCAGCCACTTTCACAGGCATTATTGTGGCTAATGTTGTCTGATTTATTGCTTCAACAAACCAGAGGACAAGTAATTGTGTATTAGTTAATAAAAGACC
>XM_005575860.2
CGACCCACCTCCTTTTAAAAATTCTCTTAGCCACGTTGACTGCACGGGAAAAACCTTTTTAAAACATTTTTTACGTTGCTTAAACCTACCATTTCGAAAGCATTCCGAAGGCTAAAGTGAGAAATAAGCCCCGGTTAGGGAGAGGAGAAACGAGTTTCACGTCCTGGTCTAGCACCGGGTTGGATTGTCGCTGGGATGGCAGTCAGGCATTTGGTGTGGTCGCCTAAGGGGTGGGTCTTTCGGCTGGGGCGCCGGGAAACCCCGTGGGCCTGCGCGGCGTTCTTCCTTTTCGATCCGCCATCTGCGGTGGAGCCGCCACAAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACCACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATATTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCATCTGATGAATGTGGTGCTGGGGTGTTTATGGCAAGCCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACTTACTGTTTCAACAAGCCAGAAGACAAGTAACTGTATGAGTTAATAAAAGACACGAACTAACCTT

Publications

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