Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HSP90AA1P2
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr8:58234157-58237033  UCSC
Strand -
Parental Sequence XM_030930159.1
Parental seq. overlap 2527 bp
Parental seq. overlap (%) 81.7%
Genomic Region Intergenic
Retrocopy Summary HSP90AA1P2, located on chr8:58234157-58237033, is a retrocopy of the parental gene HSP90AA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HSP90AA1
Full Name N/A
Also known as HSP90AA1
Coordinate chr5:160692206-160698307
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HSP90AA3P
Chimpanzee Pan troglodytes HSP90AA1P1
Bonobo Pan paniscus HSP90AA1P1
Gorilla Gorilla gorilla HSP90AA1P1
Orangutan Pongo abelii HSP90AA1P1
Gibbon Nomascus leucogenys LOC100602573P2
Marmoset Callithrix jacchus HSP90AA1P1
Dog Canis familiaris HSP90AA1P3
Egyptian rousette Rousettus aegyptiacus HSP90AA1P3
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HSP90AA1P2
TGCAGTCTCTTAGCCAAGATGCCTGAGGAAACCCAGACCCAAGACCAAccgatggaggaggaggaggttgagATGTTCACCTTTCAGGCAGAAATTGCCCAGCTGATGTCACTGATCATCATTACTTTCTACTTGAACAAATAGAACTTCCTGAGATAACTAATTTCAAATTCATCAGATACATTGGACAAAATCCAATATGAAAGGTTGACAGATCCCAGTAAATTAGACTCTGGGAAAGGGCTGCATATTACCCTTAtaccaaacaaagaaaaagaagatataatCCTCACTATTGTGGACACTGGAATTGGAATGACCAAGACTGACTTGATCAATAACCTTGGTACTATCACCAAGTCTGGGACCAAAGTGTTCATTGAAGCTTTGCAGGTTGATGCAGATCTCTCTATGACTGGCCAGTTCAGGGTTGATTTTATTCTGCTTATTTGATTGCCAAGAAAGTAACTGTGATCATCAAACATAACGATGATGAGCAATATGCCTGGGAGTCCTCAGCAGAGGAATCATTCACAGTGAGGACAGACGAGTGAACCTATGGGTCGTGGAGCAAAGGTTATCCTACACCTGAAGGAAGACCAAATTTTGAGTGCTTAGAGGAACGAAGAATAAAAAGGATTTTGAAGAAACATTCACAGTTTATTGGATATTCCATTACTCTTTTTGTGGAGAAGGAACGTGATAAAGAAGTCAGCGATGATGAAGCtgaagaaaaggagtctGAAGACAAACCTGAAATTGAAGATGTTGGTTCTGATGAAGacgaagaagaaaagaagtatggtgacaaaaagaataagaagattAAGGAAAAGTACATCGATCAAGAAAAACTCAACAAAACAAGGCCCATCTGGACCAGAAATGCCGATGGTATTACTAATGAGGAGTAAGGAGAATTCTACAGGGGCTTGACCAGTGACTGGGAAGATCACTTGGCAGTGAAGCATTTTTCAGCTGAAGGACACTTGGACTTCAGAGCCCTTCTATTTGTCCCACAACATGCTCCTTTTGACCTgtttgaaaagagaaaggaaaagaacaacaTCAAATTGTGTGTACACAGAGTTGTCATCATGGATAACTGTAAGGAGCTAATCCCTGCATATCTGAACTTCAGTAGACAGGTAGTGGACTCAAAGGATCTCCCTTTAAATATTTCCTGTGAGATGCTGCAACAAAGCAAAATTTTGAAAGTTATCGGGGAGAATTTGATCAAAGAATGCTTAGAACTCTTTACCAAACTGGCAGAAGATAAAGAGAACTACAAGAAGTTCTATGAGCAGTTCTCTAAAAGCATAAAGCTTGAAATATATGAAGACTGTCAACACTGGAAGAAGCTTTCAGAGCTGTTAAGATACTatacatctgcttctggtgatgAGATGGTTTCTCTCAAGGACTACTGCACCAGAATGAACGAAAACTAGAAACATATCTAATATATCACAGGTGAGACCAAGGACCAGGTAGCTAACTCAGCCTTTGTGGAACATCTTTGGAAACATGGCTTGGAAGTGATCTATATGATCAAGCCAATTGATGAGTACTGTGTCCAACACTGAAGGAATTTGAGGGGAAGACTTCAGTGTCAGTCACCAGAGAGGGCTTGGAACTTCCACAGGatgaagaagacaaaaagaaacaggaagagaaaaaaaacagtttGACAACATCTGCAAAATCATGAAAGACATCTTggagaaaaaagttgaaaaggtGGTTGTGTCAAACTGATTGGTAACATCTCTAGGCTATATTGTCACGAGCACATATGGCTGGAcagtaaacatggaaagaatCGTGAAAGCTCAAATCCTAAGAGACAACTCAACAATGGGTTACATGACAGCAAAGAAACACCTGGAGATAAACCCTGACCATTCCATAACTGAGACCTTAAGGCAAAAGGCAGAGGCAGATAAGTAAAGTCTGTGCAGGATCTGGTCATCTTGCTTTACGAATCTGCTCTTTTGTCTTCGGACTTTGGTCTGGAAGATCCCCAGGATCTATAGGATGATCAAACTGGGTGTGGTTATTGATGAAAATGACCCAACTGCTGATGATACTACTGAAGAAATGTCACCCCTTGAAGGAGATGATGACACATCATGCATGGAAGAAATAGACTAAACTCCAGCTGAGGGATGACTTAAACACTGGTTCAGTACTCTACAATTCCTCTGATAATATATTATCaaggatatttttctttgttttttgttaacatttaaaaGTCTGTATGGCATGACAACAACTACTTTAAGGGGAAGATAAGATTTCTTTCTACTTCTAAGTGATGCTGTGATACCTTAAGCACTAAAGCAGAGCTAGTAATTTTTTTTAGCTTCACATTGgcttattttaagagacagaggcAATGCGTGTTGTAGGATATATGTAACATGATGTCTACTTTGTCGTCTAAAGTGTTTAGCTATTAATTCGTATTCCTTAGAAGGCCAAATCTTGTTATCCAAGTGTTCCTGAGCTATACCTTGATGTTTAGAAGAAAAGTATTTGTTACATTTTGTAGGATCTACTTTTGAACTTTTCATCCCCTGTAGTTGCCAGTTCTGTATGAACTAGTCCTCTAGAAATAGGTTAACTTAAAGCAACTTGATGGAAGGAAATCTCCACAGAGAGTTCTTATTTTCCAAACAAAAGTATTGTTTGGAGGAGCAAAGTTATAAGCCTACCTAAGCCTATCACaaagcttttcaaaaaataactCAGAGCTAGTCTTGTGGATGGAAATGTAGTGCCCGAGTCAGAGTCACATTCTGCTTAAAACTGTAACAAATA
>XM_030930159.1
CGCAGGCGCGCGGCCGCGGCGGCGGTTGGGGAGGGGTCTTCCGGAAGGTTCGGGAGGCTTCTGGAAAAAGCGCCGCGCGCTGGGCGGGCCCGTCGCTATATAAGGCAGGCGCGGGGGCGGCGCGTCAGTTGCTTCAGCGTCTTGGTGCTGCTTTGCCGTGGAACGTTTGCAGCCTCTTAGCCAAGATGCCTGAGGAAACCCAGACCCAGGACCAAccgatggaggaggaggaggttgagACGTTCGCCTTTCAGGCAGAAATTGCTCAGTTGATGTCACTGATTATCAATACTTTCTATTCGAACAAAGAGATCTTCCTGAGAGAGCTAATTTCAAATTCATCAGATGCATTGGACAAAATCCGGTATGAGAGCTTGACGGATCCCAGTAAATTAGACTCTGGGAAAGAGCTGCATATTAACCTGATACCAAATAAACAAGATCGAACCCTCACTATCGTGGATACTGGAATTGGGATGACGAAGGCTGACTTGATCAATAACCTTGGTACTATCGCCAAGTCTGGGACCAAAGCGTTCATGGAAGCTTTGCAAGCTGGTGCAGATATCTCCATGATTGGCCAGTTCGGTGTTGGTTTTTATTCTGCTTATTTGGTTGCTGAGAAAGTAACTGTGATCACCAAACATAACGATGATGAGCAGTACGCCTGGGAGTCCTCGGCAGGGGGATCATTTACAGTGAGGACCGACACAGGTGAACCTATGGGTCGTGGAACAAAGGTGATCCTGCACCTGAAAGAAGACCAAACTGAGTACTTGGAGGAACGAAGAATAAAGGAGATTGTGAAGAAACATTCTCAGTTTATTGGATATCCCATTACTCTTTTTGTGGAGAAGGAACGTGATAAAGAAGTCAGCGATGATGAGgctgaagaaaaagaagacaaagaagaagaaaaagaaaaagaagagaaagagtccGAAGACAAACCTGAAATTGAAGATGTTGGTTctgatgaggaggaagaagaaaagaaggatggtgacaagaagaagaaaaagaagattaaGGAGAAGTACATCGATCAAGAAGAACTCAACAAAACAAAGCCCATCTGGACCAGAAATCCCGACGATATTACTAATGAGGAGTACGGAGAATTCTACAAGAGCTTGACCAATGACTGGGAAGATCACTTGGCAGTGAAGCATTTTTCAGTTGAAGGACAGTTGGAATTCAGAGCCCTTCTATTTGTCCCACGACGTGCTCCTTTTGACCtatttgaaaacagaaagaaaaagaacaacatcAAATTGTATGTACGCAGAGTTTTCATCATGGATAACTGTGAGGAGCTAATCCCTGAATATCTGAacttCATTAGAGGGGTGGTAGACTCGGAGGATCTCCCTCTAAATATATCCCGTGAGATGTTGCAGCAAAGCAAAATTTTGAAAGTTATCAGGAAGAATTTGGTCAAAAAATGCCTAGAACTCTTTACTGAACTGGCGGAAGATAAAGAGAACTACAAGAAGTTCTATGAGCAGTTCTCTAAAAACATAAAGCTTGGAATACATGAAGACTCACAAAATCGGAAGAAGCTTTCAGAGCTGTTAAGGTACTACACATCTGCCTCTGGCGATGAGATGGTTTCTCTCAAGGATTACTGCACCAGAATGAAGGAAAACCAgaaacatatctattatatcacagGTGAGACCAAGGACCAGGTAGCTAACTCAGCCTTTGTGGAACGTCTTCGGAAACATGGCTTAGAAGTGATCTATATGATCGAGCCCATTGATGAGTACTGTGTCCAACAGCTAAAGGAATTTGAGGGGAAGACATTAGTGTCAGTCACCAAAGAGGGCTTGGAACTTCCagaggatgaagaagaaaaaaagaaacaggaagagaaaaaaacaaagtttgagaacctctgcaaAATCATGAAAGACATACTggagaaaaaagttgaaaagGTGGTTGTGTCAAACCGATTGGTGACGTCTCCATGCTGTATTGTCACAAGCACATATGGCTGGACAGCAAACATGGAGAGAATCATGAAAGCTCAAGCCCTAAGAGACAACTCAACAATGGGTTACATGGCAGCAAAGAAACACCTGGAGATAAACCCTGACCATTCCATTATTGAGACCTTAAGGCAAAAGGCAGAGGCTGATAAGAACGACAAGTCTGTGAAGGATCTGGTCATCTTGCTTTACGAAACTGCACTCCTGTCTTCTGGCTTCAGTCTGGAAGATCCCCAGACACATGCCAACAGGATCTACAGGATGATCAAACTTGGTCTGGgTATTGATGAAGATGATCCTACTGCTGATGATACCAGTGCAGCTGTAACTGAAGAAATGCCGCCCCTCGAAGGAGATGACGACACATCACGCATGGAAGAAGTAGACTAACCTCCGGCTGAGGGATGACTTACCTGTTCAATACTCTACAGTTCTTCTGATAATATATTTTCAaggatgtttttctttatttttgttaatattaaaaagtCTGTATGGCATGACAACAGCTACTTTAAGGGGAAGATAAGATTTCTGTCTATTTCTAAGTGATGCTGTGGTACCTTAGGCACTAAAGCAGAGCTAGTAATGCTTTTTTAGTTTCACATTGGTTTAACAGATTGGGGTAACGTGTGTTGTAAGATGTATGTAACATGTTAACTTTGTGGTCTAAAGTGTTTAGCTATCAAGCCGGATTTCTGAGTAGACCAAATCTTGTTATCCGAAGTGTTCTTGAGTTATATACCTGGATGTTTAGAAAAGTATTTGTTACATCTTGTAGGATCTACTTTTTGAACTTTTCATCCCCTGTAGTTGCCAATTTTGCATGTACTAGTCCTCTAGAAATAGGTTAAACTGAAGCAGCTTGATGGAACTCTCCACAGGgcttattttccaaagaaaagtaTTGTTTGGAGGAGCAAAGTTACAAGGCTACCTAAGCATATCATAAAGCTGTTCAAAAATAACTCAAGTCTTGTGGATGGAAATGTAGTGCTCGAGTCACATTCTGCTTAAAGTTGTAACAAATACAGATGAGTTAAAAGATGTTA

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