Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name IMMP1LP4
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr15:10841455-10842265  UCSC
Strand +
Parental Sequence XM_010358317.2
Parental seq. overlap 754 bp
Parental seq. overlap (%) 68.8%
Genomic Region Intragenic (ATL3)
Retrocopy Summary IMMP1LP4, located on chr15:10841455-10842265, is a retrocopy of the parental gene IMMP1L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name IMMP1L
Full Name N/A
Also known as IMMP1L
Coordinate chr15:112936225-113013107
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens IMMP1LP1
Chimpanzee Pan troglodytes IMMP1LP1
Bonobo Pan paniscus IMMP1LP1
Gorilla Gorilla gorilla IMMP1LP2
Orangutan Pongo abelii IMMP1LP1
Gibbon Nomascus leucogenys IMMP1LP1
Green monkey Chlorocebus sabaeus IMMP1LP1
Crab-eating macaque Macaca fascicularis IMMP1LP5
Rhesus Macaca mulatta IMMP1LP5
Baboon Papio anubis IMMP1LP4
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>IMMP1LP4
aacggTTGACTTCTGGGGGGCCCAGGTGAGAAAGGCCCACCTGTGTCCTGGTTGAGGGTCTTCAGGGTTCTTTGGGACCCAAGGATTCCTGAAATCATGGATCACCCACATACGCTTTGagacatgcttttttttttttttctggaagcccTGCGACTTCCCTAAAAATTGAATGAATTATAGAACAGACCTATGACCAATGGTGGCAGAGTCTACACAGAACTATGCTTCATGGTGTTCTGGGGAAACCTTTCGACTTGCTGGCTATACTATTCAGTATGGCTGTATAGCTCACTGTGCTTTTGAATACGTTGGTGGTGTTGTCATGTGTTCTGGACCATCAGTGGAGCCTACAATTCAAAACTCAGATATTGTCTTTGAAGAAAATTTTAGTCGACATTTTTATAGTATCCAAAGAAGTGACTGCAAAAAGCCCAAGTGATCCAAaatcaaatatttgtaaaagagTAACTGGTTTGGAAGGAGAAAAAATCCTCACCTCTAGTCCATCAGATTTCCTTAAAAGCCACAGTTATGCCCCAGTGGGTCATGTCTGGTCAGAAGGTGATAATCTACAGAATTCTATAGATTCCAGGTACTATGGACCTACTCCACGTGAACTAATAAGAGCACGAATCTTCTTATTTGGCCTCTGAGtgattttggatttttatgtGCCAGCCTTAATGGCCACAgattttctgatgattagtaagCATTTATTCTTTTGACTTGATTATTATCTCCTGTTCGTGTGAATGTATTACTCCCACTGAAACCACATACTTACCAATAAACTATTTGctattc
>XM_010358317.2
CGTAAGGACGGTCGACTTCGGCGGGGCCCAGGTGAGAAAGGCCCACCTGTGTCCTGTTTGAGGGTCTTCAGGGTTCTTTGGGGCCCGAGGATTCCTGAAATCATGGATCACTCACCTATGCTTTGAGACAtgctttaatgttttttttttttctggaagcccTGCAACTTCCCTAAAAATTGAATGAATTATAGGACAGACCTATGGTGAAGCGACTTCCAGTCATTTGGAAAGGATGGGATGAAAAGGAACCTTGGTGATAATTTTGATGTCTGCAAGATTTAGTACCAGTGTAATGGGATTATCGATAACACCTTCACTGCAGAAAAAGCCACCTGGTGCTATAACTGGCAGCAACCGAGAACTAATCCTTTCCCATCTCTTGGATGTCATTCATGAAGCTCAAAGCTATTTCTACCCTGCTAACTgtgattaattttataaacaacaacaacaaaaaatcagGCCAATGGTGGCAGAGTCTACATAGAACTATGCTTCGTGGTGTTCTGGGGAAAACCTTTCGACTTGTTGGCTATACTATTCAGTATGGCTGTATAGCTCATTGTGCTTTTGAATACGTTGGTGGTGTTGTCATGTGTTCTGGACCATCAATGGAGCCTACAATTCAAAATTCAGATATTGTCTTTGCAGAAAATCTTAGTCGACATTTTTATGGTATCCAAAGAGGTGACATTGTGATTGCAAAAAGCCCAAGTGATCCAAaatcaaatatttgtaaaagagTAATTGGTTTGGAAGGAGACAAAATCCTCACCACTAGTCCATCAGATTTCTTTAAAAGTCATAGTTATGTGCCAATGGGTCATGTTTGGTTAGAAGGTGATAATCTACAGAATTCTACAGATTCCAGATACTATGGACCTATTCCATATGGACTAATAAGAGGACGAATCTTCTTTAAGATTTGGCCTCTGAGTGATTTTGGATTTTTACGTGCCAGCCCTAATGGCCACAgattttctgatgattagtaatcatttattcttttgacttGATTATTGTCTCCTTTTCATGTGAATTTATTACTCCCGTTGAAACCATGTACTAATAAACTATTTGCTATTcagt

Publications

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