Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LDHAL6AP5
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr10:47736389-47737320  UCSC
Strand -
Parental Sequence XM_030917627.1
Parental seq. overlap 702 bp
Parental seq. overlap (%) 37%
Genomic Region Intergenic
Retrocopy Summary LDHAL6AP5, located on chr10:47736389-47737320, is a retrocopy of the parental gene LDHAL6A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LDHAL6A
Full Name N/A
Also known as LDHAL6A
Coordinate chr15:117584125-117616495
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens LDHAL6CP
Chimpanzee Pan troglodytes LDHAL6AP4
Bonobo Pan paniscus LDHAL6AP4
Gorilla Gorilla gorilla LDHAL6AP3
Orangutan Pongo abelii LDHAL6AP4
Gibbon Nomascus leucogenys LDHAL6AP4
Green monkey Chlorocebus sabaeus LDHAL6AP4
Crab-eating macaque Macaca fascicularis LDHAL6AP4
Rhesus Macaca mulatta LDHAL6AP4
Baboon Papio anubis LDHAL6AP3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LDHAL6AP5
TCATCACAGTAAGGTCTCCATCATAGGAACTGGATCAGTGGGCATGGCCTGCGCTATCAGCATCTTATTAAAAGGCTTGAGTGATGAACTTGCCTTTGTGGATCTTGATGAAGGCAAACCGAAAGGTGAGACAATGGATCTTCAACATTCAGCCCTTTCATGAAACTGCCAAACATTGTTTGTAGCAAAGATTACCTTGTCATGGCAAACCCCAGCCTAGTGATTATTACAGCAGGGGCATGCCAAGAAAAGGGAGAAACGCGCCTTTACGAAGCCTGGAAGTTGAGTGCGTTTCCTAAAAACCGTGTTATTGGAAGCGGCTGTAGTCTGGATACTGCTCGTTTCCTATTCTTGATTGGACAAAAACTTCGTATCCACTCTGAAAGCTGCCATGGATGTATCCTCGGAGAGCATGGAGACTCAAGTGTTCCTGTGTGGAGTGGAGTGAACATAGCTGGTGTCCTTTTGAGGGATCTAATCTCTGATATAGGAACTGATAAAAATCCTGAGCAGTGGAAAAATGTCCACGAAGAAGTGATTGCTAGTGCCTATGAGATTATTAAAGTGAAAAGTTCTACTTCTTGGGCCATTCGCCTATCTGTAGCTGATTTAACAGAAAGTATTTTGAAGAATATTAGGAGAACGCAACCAGTTTCCACCATAATTAAGGGCCTCtgtggaataaatgaaaaaatattcctcAGTATTCCTTCCTTGGAGAGAAGGGTATTACTAGCCTTATAAAGATAAAGCTGACCGCTGAAGAGGAGGCCCATATGAAAAATAGTGCAAAAACACTGTGGGAAATTCAGAAGGAGCTT
>XM_030917627.1
TCACACCTGCCAAGCATCACACCTGCGATGCCTGCACGAGCTGGGTGCGGTCCACGCAGCTGCAGTAAGGGGGTGACCCGGCGTCTATTAGTTGGTGGTTCATCTCCTTCGTGCCTCGACGAGCTGTGACGCCGCTTTCCTCCATTCTCTTTCTTCACCTCTTGAGTTTCCAAGATGGCAACTGTCAAGAGTGAACTTATTAAGAATTTCGCAAAAGAGGAGGCCATTCATCACAATAAGATCTCCATTGTAGGAACTGGATCGGTTGGTGTGGCTTGTGCTATCACCATCTTATTAAAAGGTTTGAGTGATGAACTTGTCCTTGTGGATGTTGATGAAGGCAAACTGAAGGGTGAGACAATGGATCTTCAACATGGCAGCCCTTTTATGAAAATGCCAAATATTGTCTCCAGCAAAGATTACTTGGTCACTGCAAACTCCAATCTAGTGATTATTACAGCAGGTGCACGccagaaaaaaggagaaacacGCCTTGATTTAGTCCAGCGAAATGTGTCCGTCTTTAAATTAATGATTCCCAATATTACCCAATATAGCCCTCACTGCAAACTGCTTATTGTTACTAATCCAGTGGATATCTTAACTTATGTAGCCTGGAAGTTGAGCGCATTTCCCAAAAACCGTGTTATTGGAAGTGGTTGTAATCTGGACTCTGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGGGCTGATCCTTGGAGAGCATGGCGACTCAAGTGTTCCTGTGTGGAGTGGTGTGAACATTGCTGGTGTCCCTCTGAAGGATCTGAACCCAGATATAGGAACTGATAAAGATCCTGAGCAGTGGGAAAATGTCCACAAAAAAGTGATTTCCAGTGGCTATGAGATGGTCAAAATGAAAGGTTATACTTCTTGGGGCATTAGCCTATCTGTAGCTGATTTAACAGAAAGTATTTTGAAGAATCTCAGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTCTatggaataaatgaagaaatattcctTAGTGTCCCATGTATCCTGGGAGAGAATGGTATCACAGACCTCATAAAAGTAAAACTGACCCTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCAGAAACACTTTGGGAAATTCAGAAGGAGCTCAAGTTTTAAAGTTGCTTAAAGTTACCATTCTATAGATTGAAGATGAAATAGTAGTTATGGAACTGTATATGTCAAACTTTAGAATAAATGTGAATTTCTAAAAGTTGGAAAAACGGAGGAAAGAGTGACCTATTTAGTGTAGCCttccggctttttttttttgggtgggtctcattctgttacccaggctggaacgcagtggcaccatcacggctcactgcaaccttgacctcccgaactcaggtgagcctcccacttcagccttcagagtaggtgggaccacatgcgtgtgcctccatgcctggctaatttttgtattttttttgtagagatggggttttgaactcccaaagtgctgtgattacaggggcgagccactgtgcttggccttagCTTTGATTTAGAATCCAGATGATGGacgacacttttttttttttcctccaaacaaAAGTGATGGCATCAAAGATGTTTTTGGTACCTTTTAGTACTTGCCTTGTATGTATACATAACTGCCATCTGGTCCATGAGAATGTGTATACTGTGTTATAGAAATCTTGATTCTTTTCATCAGGTGCATAGTAATTCTTCTCTATGGCTTAATACCTATGTTCATTTACATGCTATTTAATAAAAGCTTTAATTTCCTctacaatgtaaaaataaaagtatatatatgcacacacacacaaagtaatcTAAATGTTCCTAACATTAGATAAAACCTTGGTTTGA

Publications

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