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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104659583P28
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr11:112725900-112726254  UCSC
Strand -
Parental Sequence XM_010359652.2
Parental seq. overlap 324 bp
Parental seq. overlap (%) 63.5%
Genomic Region Intergenic
Retrocopy Summary LOC104659583P28, located on chr11:112725900-112726254, is a retrocopy of the parental gene LOC104659583. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104659583
Full Name N/A
Also known as LOC104659583
Coordinate chr7:151251990-151256702
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL36AP36
Chimpanzee Pan troglodytes RPL36AP25
Bonobo Pan paniscus LOC100993427P22
Gorilla Gorilla gorilla LOC101135216P22
Orangutan Pongo abelii RPL36AP24
Gibbon Nomascus leucogenys LOC100595785P17
Green monkey Chlorocebus sabaeus LOC103241865P3
Crab-eating macaque Macaca fascicularis LOC102125097P25
Rhesus Macaca mulatta LOC703365P24
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104659583P28
AACGTTCCTAAAACCCGCTGGACTTTCTATAAGAAGTGTGCCAAGCACCAACCCCACAAAGTGACACAGTTCACGAAGGACAAGGATTCTCTGTATGCCCAGGGAAAGCGGTGTTATGACAGGAAGCAGAGTGGCCATCGTGGGCTAACTAAGAGTGGCCATCGTGGGCTAACTACAGAAGATTGTGCTAAGGCTTGAGTGCGTTGAGCCCAGCTGCAGCTCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCATTTTGAACTGGGAGGAAATAAGAAGAGAAATGGCCAAGTGATCCAGTTCTAagtatcatgttttcttttattatgaagacaataaaatcttgagttt
>XM_010359652.2
CGAGCCTTACACTCTATGATTGCTCCTACCGACTCCCAAGAGGAAGTGCGATCGGGAACCTCCTATATACTTCCGTTTGCGGCgcggcttctttctttctcccgtGTCGATATCGCTCTTGCAAGCATGGTTAACGTCCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCACAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTATGCCCAGGGAAAGCGGCGCTATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGgctaaaactacaaagaagattgTGCTAAGGCTTGAGTGCGTTGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCATTTTGAACTGGGAGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGTGTCATCTTTTATTATGAAGACAATAAAATCTTGAGTTTATGTTCAGTTCA

Publications

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