Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104659611P4
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr13:102026126-102026540  UCSC
Strand -
Parental Sequence XM_030922844.1
Parental seq. overlap 338 bp
Parental seq. overlap (%) 17.3%
Genomic Region Intergenic
Retrocopy Summary LOC104659611P4, located on chr13:102026126-102026540, is a retrocopy of the parental gene LOC104659611. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104659611
Full Name N/A
Also known as LOC104659611
Coordinate chr19:34114961-34141881
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TVP23BP5
Chimpanzee Pan troglodytes TVP23BP8
Bonobo Pan paniscus CDRT4P8
Gorilla Gorilla gorilla TVP23BP4
Gibbon Nomascus leucogenys LOC101176802P3
Green monkey Chlorocebus sabaeus TVP23BP1
Crab-eating macaque Macaca fascicularis LOC102138187P5
Rhesus Macaca mulatta TVP23BP5
Marmoset Callithrix jacchus LOC118142797P1
Orangutan Pongo abelii Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104659611P4
AGTAATGATTATACTGAAGATATTTCACTGTTTGATTTAGAAGGGTAGACAACTAATAGACCAAGGAAATCTAAACCCAGATATCCAGTGGCATcgctttttctttaattattttgagtCAGTGCAATCACCATCTATTTTCTCCATGAACTGCCCAGAAGTAGCTTTCTTGACTGTGTGGTGACAATGATCTCTTTGTCAGGTGGCTTTTGTGCAGTGAAGAATGTGACCGGCAGAGTAATGATTGGACTATGTTGGTGGAATCACATTGACGACAATGGAAAGGGCCATCGGGCATTTGAGTCTTGGGAGGCATCCTCTTAAGAGAGTAAAACTGTCTTAGAGGCTGAAATAAGAATCTTCTGGTTGGGACTAATGGCCTGTCCATGCTGTGAGTGATATTTGCCTTTAGTGT
>XM_030922844.1
GACCAGCCCGAACGGGGGTCTCTCTTTCTTCAGCCCTTAGTgcgggggtggaggtggggagtaGCGGCCTGCGGGCCTCTTAGATCCCTGACCCCCAGGGCTGCGATGCGATCTTGTAGGAATCGGCGACACCGCCAGAGCCTCGCTTTCAAGTTACTCTTCCCAAACTAATGTTGGTGATTCTCTCTTTTGTGCTCTTAAATTGTAGTCCACGTGTTGGCAACCGGAGACTAGGTAGTAATGATGACACTGAAGATGTTTCCCTGTTTGATGCAGAAGAGGAGACGACTAATAGACCAAGAAAATCCAAAATCAGACATCCAGTAGCATCATTTTTCCACTTATTCTTTCGAGTCAGTGCAATCGTCGTCTACCTTCTCTGTGAGTTGCTCAGCAGCAGCTTTATTACCTGTATGGTGACAATTATCTTGTTATTGTCGTGTGACTTTTGGGCAGTGAAGAATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGATGGAAAGAGCCACTGGGTGTTTGAATCTAGAAAGgaGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCTGTCCAGTGCTGTGGGTGATATTTGCCTTTAGTGCACTCTTCTCCTTCAGAGTAAAATGGTTGGCGGTGGTTATCATGGGTGTGGTGCTACAAGGTGCCAACCTGTATGGTTACATCAGGTGTAAGGTGGGCAGCAGAAAGAATTTAACCAGCATGGCTACTTCATATTTTGGAAAGCAGTTCTTACGACAAAACACTGGAGATGATCAGACTTCCTGAATAGAGAAAACTTAATGTGCTTTGTTACATTGGGGAACAACTGAAGAGATTCTTGACTCTGAACCTTTTAGAGCTTAGTCCATGTTGCAACGAGGAGTGTTGGCTTTGTTTTTCCacttaaaaactttatttataaaaaggaaaagtagttttcatattaagtttttatttcctttccagcATTTGGGGCTAGAAAGTATATGTTGGATTTATTATGCACATGTTCCATAGGTATGCACACAGTCATGTAATACCAGTATATCCCAAGTTAATGGAAGTGTTTATTTACATAGGTAATGGAGACCTTTGCATTTTGATCCATAAAACATAGGAGGATGTTCTTAGTCTGTCTCAAAGCTCTATGTGTTTACATATTATTTCTGTAGATTATTTTCAGGAGTAAATTTTGCTTCCATGGTAAGAGTGAGCACTTTGGCTTAATAAGTTAGAAATTATTGTTAGTTTTTAATATGTACTTCATGGGGAAATTTCTTAGACATATACAAGCAAGTGAAAACAATTAGGGCCAGTGGTATTAACTCCtttctaaaatcttatttttatttgtaagaagTCATTTACTGAAGGCCCAGttaatataagtggaatcatcATCGTTTGTTTAAGGAATACCCAGAGATTGCTgctgttctatttattttacagaaaggATAGCTAGATTGAAAGCTCTTCAGTGGACCTTGAGCTAATAGATCTTTTACCACTAAAAGAGCATTATTCTCATGTCATAATGAGAATAATCATTTACATACTTGGCATAATAAATGCCTAAAAGACACTTTATTTTctgaatctatttttttcttgctataatGGGGATATTGTAAATTATGCATTTGTATTAATGGTATTTCTTAAAGCATTCTGTGTAACTGTAAACCAATCTACAAACTATTGTAGGCATTTGTAAATTCTGTTGTAGGTATCATAAACTTTGTTGAAGTCTTAATCAGCAGATTATGTTGTGAATATATTTGTACAttgttaaaattagtttttaagaTTATTTGTTTAATTGAATAAGTGTCTTATTGGAGTGATAGCTTTGAAGGTGCAAaactttatatttgtataaaattctaCTGTTTACAAGGCA

Publications

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