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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104665380P4
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr9:139961868-139962248  UCSC
Strand +
Parental Sequence XM_030936201.1
Parental seq. overlap 300 bp
Parental seq. overlap (%) 73.5%
Genomic Region Intergenic
Retrocopy Summary LOC104665380P4, located on chr9:139961868-139962248, is a retrocopy of the parental gene LOC104665380. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104665380
Full Name N/A
Also known as LOC104665380
Coordinate chr8:10109519-10110236
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL32P19
Chimpanzee Pan troglodytes RPL32P16
Bonobo Pan paniscus RPL32P16
Gorilla Gorilla gorilla RPL32P21
Orangutan Pongo abelii RPL32P20
Gibbon Nomascus leucogenys RPL32P6
Green monkey Chlorocebus sabaeus RPL32P8
Crab-eating macaque Macaca fascicularis RPL32P19
Rhesus Macaca mulatta RPL32P20
Baboon Papio anubis RPL32P19
Marmoset Callithrix jacchus RPL32P44
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104665380P4
AAAGCCCAAGATGGTCAAAAAGAGGACCAAGAAGTTCATCTGGCACCAGTCAGACGGACAGGTCCAAGTCAAGCGTAACTGGTGAAAAGCCAGAGGTATTGATGACAAGGTGCAGAGAAGATTTAAGGGTCAGATGTTGATGCCCAACTGTGGTTATGGggacaacaagaaaacaaaacacataccGCGCAGCAGCTTCCACAAGTTCCTGGTCCACACTGTCAAGGAGCCGCAGGAGCTGCTGATGTGCAGCAAATCTTGCTGCACTGAGATTGTTCACCATGTCTCTTCCAAGAACTGCAAAGCTATCTTGGAAAGAGCAGCCCATCTGGCCATCAGGGTAAACAATCCCAATGCCAGACTGTGcagcaaagaaaatga
>XM_030936201.1
ATGGCCGCCTTCAGACTCCTCATGAAGCCCAAGGTCGTCAAAAAGAGGACCAAGCTGTTCATCCGGCACCAGTCAGAACAATATGTCAAAATTAAGTGTAACTGGAGGAAACCCAGAGGAATTAACAACAGGGTTCGCAGAAGGTTcaaGGGCCAGATCTTCATGCCCAACATTGGTTATGGgagcaacaaaaaaacaaagcacatgCTGCCCTGTGGCTTCCAGAAGTTCCTGGTCCCCAATGTCAAGGAGCTGGAAGTGCTGCTGATGTGCAACAAACCTCCCTGTGCTGAGATCGCTCACAGCGCTTCTTCCGAGAAGCGCAAAGCCATCATGGAAAGGGCCGCCCAGCTGGCCATCAGAGTTACCCACCCCAACGCCAGGCTGCGCAGTGAAGAAAATGAGTAG

Publications

PMID - Link Title