Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104667896P1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr7:6569858-6571805  UCSC
Strand -
Parental Sequence XM_030912678.1
Parental seq. overlap 1643 bp
Parental seq. overlap (%) 54%
Genomic Region Intergenic
Retrocopy Summary LOC104667896P1, located on chr7:6569858-6571805, is a retrocopy of the parental gene LOC104667896. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104667896
Full Name N/A
Also known as LOC104667896
Coordinate chr12:79983924-80000341
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LOC100611724P8
Bonobo Pan paniscus LOC100967780P3
Gorilla Gorilla gorilla LOC109024078P6
Orangutan Pongo abelii LOC100451404P10
Gibbon Nomascus leucogenys LOC100586615P1
Crab-eating macaque Macaca fascicularis LOC102116731P1
Rhesus Macaca mulatta LOC698090P1
Baboon Papio anubis LOC101013791P2
Human Homo sapiens Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104667896P1
TGAAAATTAGGGATGTGGTCATAGAATTCTCTCTGGTGGAGTCACAATGCCTGGACACTGCACAGTGGAATTTATATAGTAATGTGATGTTAGAGAATTACAGAAACCTGGCTTTCCTTGGTATTACTGTCTCTCAGCCAGACCTGATTACCTGTTTGGAGCAAGAAAAAGAGTCTTGGACTACAAAGAGACAAGAGATGATAGCCAAATCCCCAgttatgtgttctcatttttcccAAGACTTTTGGCCAGAGCAGATCATAAAAGATTCTTTCCAAAAAGTGACATTGAAAGGATATGGAAAATGCAAACATGAGAATTTACAGTTAAGAAAACGTGGTAAATGTGTGTGAATGATTGCAAGGTGCCAAAAAGAGGTTATAATGGACTTGATCAATGTTTACTCACTACCAAGTGTGAAGTATTTGAATgtgataaatatgtgaaaatgtttCATAAATCTTCAAATTTAAATGGACATAAGATAAGACATACTGGAAAAGAAAACCTgttaaatgtaaagaatgtgacAAATTATTTTGCATGTTTACAAACCTAACTCAACATAAACTAATTTATACTAGAGTAAATTTCTACAAATGTGAAGACTACAGAAAAGCTTTTAATGGGTCCTCAATCTTTACTAAACATAAAAGAATTCATATTGGAGAggaaccctacaaatgtgaagaatgtggcaacatcactaatcagttctcaaaccttactacacataagataatttatactagagagaaaccctataaatgtgaaaaatgtggcaaagcctttgaTCTTTCCTTATATTTTACTACACATCAAataattcacactggagagaaaccctgcaaatttgaagaatgtggcaaagtctTCAACCAGTCCTCAATCCTTACTACACAAGATAATTCACACCAGAGAAAAATTCAACAAAcataaagaatgtggcaaagatTTTAGCGAACCCGCATACATTAGTGAACatgagaaaattcatactggagagaaactctcCAAAGGTGTAGAATGTGGCGAAGTTTTTAACCAGTCCTCACACCTTACcagacataagataattcatactacAGAGATatcctacaaatgtgaagaatatgGCACAGCCTTTAGGCAGTCCCCACACCCTAttacacataagataattcacactggagagaaaacCTGCAAATATGAAGCATGTGACAAAGCCTTTAACAAGTCTTCACCTTACtagacataagataattcatactaaAGAGAAATCCTATCAATGTCGAAAATAAGGCAAAGCTTTTTATCGATCTTCAAAACTTACTGAAcacaagaaaattcatactggagagaaactgtACACatatgaagaatgtggcaaagtctTTAACCATTTCTCACACCTTTctacacataagataattcatactgcaGAGAAATCCTACCAGTGTGAGAAATGTGGTAAAGTCTTTAATCAATCGTCACACCTTACTAGATAAGAGAAATCATACCGGAGAGAAACCCTACCAATGTGAAGAATGTGTCAAAGATTTTAACCAATACTGAAGACCTGCAggacataagaaaattcatatttgtgagaaactctacaaacctaAAAGATATAACAGTGATTTTGATAACACCTCAAACTTTtctaaacataaaagaaattGTACTGGTGAGAAATCttaaaaatgtgaagaatgtaACAAAGCTTTTAAATGGTTGTTATACTTGATtatacataagaaaattcatacaaaaaaaaaaaaaacttgtacaagtgtgaagaatgtggcaaaacttttAACCAATGCTCACACTTTATTGCACAGGAGGTCATTTGTCCTTGAAAAAATCTttacaaatataaagaatatgAAAAGTCATTAATATCTGCTCACATCTTACTTAACATCAGAGAGTTCAGACTTAACAAAAGtattataaatgcaaa
>XM_030912678.1
CTTTGTGTCTCTCCAGCCGGAGCTCGAGGTTTCGACTTCACTGCTCTGTGTCCTCTCCTTCTAGAGGCCCAGTCTCTGTGGCTCAGTGACCTGCAGTTATTGGAGATCCATAGCTAAGACGCCAGGGCCCCCGGAAACCTAGAAATGGTGAGAATGCCGGGTCCGACATCCCGAGAGACGGGAAGGGGCTATGGCGGGACTCAGGCTTCCCCGCAGTCAGTTCCACAGTCTGCACCCTGAGTTCTCGCCCAGGTCGGCCTCAGTCCCCTTCGACGGAACCACTGAAATTTAgggatgtggccatagaattctctctGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTGTATAGGAATGTGATGTTagagaactacagaaacctgGTCTTCTTGGGTATTGCTGTCTCTAAGCCAGATCTGATCACCTGTCTGGAGCAAGAAAAAGAGCCTTGGACTAGAAAGAGACATAGGATAGTGGCCAAACCCCCAGttacTTGTTCTCATTTTGCCCAAGACTTTTCACCAGAGCAGAACATAAAAGATTCTTTCCAAAAAGTGACACTGAGAAGCTATGGAAAATATGAACATGAGAATTTACAGTTAAGAAAATGTAGTAAAAGTGTGGATGAGTGCAGGTTGCAAAAAGGAGGTTACAATGGACTTAACCAATGTTTGCCAGCTACCCAGAGCAAACTATTTCATTGTGATGAATATATGAAAATCtttcataaattttcaaatttaaatggaCATAAGATAAGACACACCAGAACAAAACCTTTTACATGTAAAGAATTTGGCAAATCATTTTACATGTTTTCAAACCTAACTCAACATAAAATAACTTGTACTAGAGTAAATTTCTACAAATGTGAAGACTGTGGAAAAGCCTTTAATGGATCCTTAATCTTTACTAAACATAAAAGAAATCATAGTGGAGAGAAACcgtacaaatgtgaagaatgtggcaaagcctgtAACCAGTTCACaaaccttactacacataagataatttacactacagagaaactctacaaatgtgaagaatgtagTGAAGCCTTTAACCTGTCGTCACACATTACaacacataaaataattaatactgGAGAGAATCCCTACAAAcatgaagaatgtggcaaagcctttaatcggtcctcaacccttactacacataagataattcatactagAGAGAAACTCAATGAATATgaggaatgtggcaaagctttcaaCCAGCCCTCACACCTCAGcagacataagataattcatactggagagaaagcctacaaatgtgaagaatgtggtaaaGCCTTTAAGCGGCCCTCACACCTTACcagacataagataattcatactggagagaaagcctacaaatgtgaagaatgtggtaaaGCCTTTAAGCGGCCCTCACACCTTACcagacataagataattcatactggagagaaagcctacaaatgtgaagaatgtggtaaaGCCTTTAACCGGCCCTCACACCTTACcagacataagataattcatactggagagaagccctacaaatgtgaagaatgtggcaaagcctttaaccgGCCCTCaaaccttactacacataagataattcatacaggagagaagccctacaaatgtgaagaatgtggcaaagcctttaatcagtcctcaacccttactacacataagataattcatactagagagaaactcaataaatataaGGAATGTGGCAAAACTTTCCACCAGCCCTCACACCTCAGCAGACATAAGAGAATTCGTACTGGAGAGAAagcctacaaatgtgaagaatgtggtaaagcctttaaccagtcctcacaccttactacacataagatgattcatactggagagaagccctacaaatgtgaagaatgtggcaaagcctttacgCGGTCCGTgcaccttactacacataagatgattcatactggagagaagccctacaaatgtgaagaatgtggcaaagcttttaataATTCTTCACACCTTACTAGACATAAGAGCAttcatgctggagagaaaccctaccaatgtgaaaaatgtggcaaAACTTCTAACCCATCCTCAAAACTTACtgaacataagaaaattcatattaGAGAGAAACGCTatacatgtgaagaatgtggcaaagcctttaaccgGTCCTCACAGCTTACtagacataagagaattcatactggagagaaaccctaccaatgtgaaaaatgtggcaaagcttttaaccagtCCTCACACCTTACtgcacataagaaaattcatactggtgagaaactctacaaacctaAAAGATGTAACTGTGATTTTGAAAACACCTCAAATTTTTCTAAACATAAAGGAAATTATACTGGTGAGAAATCTTAGAAATCTGAAGAATGTAACAAACCCTTTAAAAGTTGTCACACTTCATTgtacataagataattcatactaaAAACCTACAAGTGTTTTTAGCATGTGGCAAAACTTGTAACCAATGCTTACACCTTATTGCACAGGAAAGGATttgtactagaaaaaaaaaagtcaaatatacagAATGTGAAAAAGCCATTAATACCCGTTCACATCTCACTCAACATCAGAGTTCATACTTAATAAAAGCATTATACATGCAATTACGtcaaaaatctttcagaaaatataagCCTCTAAAGTGAAGAGTATTCATTTTGATGACATACATTATGAACATCAAGAGGATTTTAgttgttaggcaggaatctagacccaacatggtgATATCACCTGGCATGGCAGGCTCTTTGTTAGGACTGCCTGCCCTTCACTTCCTGCTAAGACTGTCAGTGTGCGAAAAAAGCCCGCGTCCGCCAAAGAACCCCCACTCTGCGCAAGCTCCTGGACATGTTATTCCCCAGAAGTCGAAACCTACCTCAAGAAAGCTGATAGCTACAAACCCCGCCTACCTCGGCCCTCCCACTAGAGGACATGTGAACCTCTCCCGCGAGCCCAATAAAGGCTGCCTTTGTTCTCA

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