Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104669314P2
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Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr12:74350422-74351957  UCSC
Strand +
Parental Sequence XM_030942328.1
Parental seq. overlap 1168 bp
Parental seq. overlap (%) 63%
Genomic Region Intragenic (ZNF430)
Retrocopy Summary LOC104669314P2, located on chr12:74350422-74351957, is a retrocopy of the parental gene LOC104669314. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104669314
Full Name N/A
Also known as LOC104669314
Coordinate chr12:74977230-75033158
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF723P6
Chimpanzee Pan troglodytes LOC100611724P5
Bonobo Pan paniscus LOC100967780P2
Gorilla Gorilla gorilla ZNF66P6
Orangutan Pongo abelii LOC100445798P2
Gibbon Nomascus leucogenys LOC100584580P1
Green monkey Chlorocebus sabaeus LOC103234271P1
Crab-eating macaque Macaca fascicularis LOC102128845P4
Rhesus Macaca mulatta ZNF195P6
Marmoset Callithrix jacchus LOC100414379P1
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104669314P2
tcagttataTATTCTCATTTTGCCCAAGACCTTTGGCCAGAGCAGGGCATAAAAGATTCTTTCCAAGAAGTCATATTGAGAAGATATGGAAAATGTGTACATGAAGATTTACAGTTAAGAACAGACTGTAAAAGTGTGGATGAGTGTAATCTGCACAAAGAATGTTATAATGAACTAAACCAGTGTTTGACAACTACCCAGAGTGAAATATTTCAATGTGATAAATATGTGAATgtcttttataaattttcaaattcaaatataCATAAGACAAGACATACAGGAAAGAAGCCtttcaaatgtaaaaaatgtgACAAATCGTTTTGCATGCTTTTACACCTAACTCAACATAAAAGAATTCATATTAGGGAAAATTCTTAccaatgtgaagaatgtggtaaaGTCTTTAACTGGTTCTCAACCCTTACTAGACACagaagaattcatactggagagaaaccctataaatgtgaagaatgtggcaaagcttttaagcagtcctcaacccttactacacataagataattcatactggagagaaaccctacagatgtgaagaatgtggcaaaacctttAACCGGTCTTcacaccttactacacataaaagaattcatactggagagaaaccctacagatgtgaagaatgtggcagagCTTTTAACCGGTCCTcacaccttactacacataagattattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcttttaaccaatCCTCAACCCTTGctacacataagataattcatgctggagagaaaccttacaaatgtgaagaatgtggcaaagctttttaCCGATTCTCAtaccttactaaacataagataattcataccgGAGAGAAgttctacaaatgtgaagaatgtggcaaaggctTTAATTGGTCCTCAACCCTTACTAAACATAAAAGAATTCATAccggagagaaaccctacaaatgtgaacaatgtggcaaagcttttaatgAGTCCTCAAACCTTACtgcacataagataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttaaccgGTCCCCAAAACTTACTGCACATAAGGTAATTCAttctggagagaaaccctacaaatgtgaaaaatgtggcaaagcttttaaccaatTCTCAaaccttactaaacataagataaCTCATATTGGAGATACATCTTACACATATCTAGAATGTGATAAAGCCTTTAGCCAGTCTTCAACTCTTGctaaacataaggtaattcatactggagagaaaccctacaactGTGAAGAATACAGCAAAGCTTTCAACCAGTCCTCAAACCTTATTGAACAaagtaattcatactggagagaaacgctacaaatgtgaagatgtggcaaagcctttaaccagtCCTGAATtcttactaaacataagaaaattcatactgaagAGGAACCTTATGAATGTGAAGAATATGGCAAAGCCTTCAACAAGTCCTCAATTCTTACCagacataaaataattcat
>XM_030942328.1
atgaagGATGACCTGAGGTATGGAATGTGTCCTCTCAAGGAAGCAAGTGGATGCCCTGGGGCTGAGAGGAATCTTCTGGTGCACTCTTATTTTGAAAAGgggCCATTGACATTTAgggatgtggccatagaattctctctGGAGGAGAGGCAATGCCTGGACACTGCTCAGTGGGATTTGTATAGGAAAGTGATGTTagagaactacagaaacctgTCCTTCTTGGGTATTGCTGTCACGAAGCCAGACCTGGTCACCTGTCTGGAGCAAGGAAAAGAGTCCTGGAATATAAAGAGTCATGAGATGGTAGCCAAACCCCCAGttataTGTTCTCATTTTGCCCAAGACCTTTGGCCAGAGCAGTACATTAAAAATCCTTTTCAAGAAGTGATActgaaaaaatgtggaaaatgtggACATGAGAATTTACAGTTACAAAAAGGCTATAAAACTGTGGGTGAGTGTGAGGTGCACAAAGAAGATGATAACAAATTAAACCAGTGTTTGATAACTACCCAGAGAAACATATTTCAATGTGATCCATATGCAAAATTCTTTCATAAACTTTCAAATTCGAACAGATATAAGATAAGACATATGGGAAAGAAACCTATCAAATGTAAAAAGTGTGAGAAATCATTTTGCATGCTCTTACACCTAAGTCAACATAAAAGATTTCATATTGCAGAAAATTCCTACCAATGTAAAGATTGTGGCAAAGCCTTCAACTGGTTCTCAATTCTTACTGAACAcaggagaattcatactggagagaaaccctacaaatacgaagaatgtgacaaagcttTTCATCAATCCTCAACCCTAACTGCCCATAAGATAACTcatgctggagagaaaccctacaagtgtgaagaatgtgacaaagcttTTGACCAATTCTCATACCTTAAGAAACATAAGATAAgtcatactggagagaaattctacaaatgtgaagaatgtggcaaaggctTTAACTGGCCCTCATACCTAATTGCACATCagataattcatactggggaGAAGCCCTACAACTGTGAAGATTGTGGCAAAGCCTTTTACCAGTCCTCAACtcttactaaacataagaaaattcatactggagagaaaccctacaaatgtgaagaatgtgggaaaGAATTTAAATGGTCCTCACAacttactacacataagataattcatactggagagaaaccgtacagatgtgaagaatgtgggaaagcctttaacCAGTCTTCAAACCTCACTACACAtaaaagaattcatactggagagaaaccctacaaatgtgaagaacgTGGCAAAGATTTTCACAAATCCTCAAACCTAACTGCCCATAAGAAAACTcatgctggagagaaaccctacaaatgtgaagattGTGGCAAAACCTTTAACTGGTCCTCAGCtcttactaaacataaaaaaaatcatactggagagaaaccctacaaatgtgaagaatgtggcaaagacTTTAACTTGTCCTCACAACTGACTGCACATAAGAtaactcatactggagagaagccctacaaatgtgaagattgtggcaaagcctttaaccacTCCTCAACTCTTACtgcacataagagaattcatactggagagaaaccctacaaatgtgaaaaatgtggcaaAGCGTTTAACCAGTCCTCAATTctttctaaacaagataattcatactggagagaaattcTACAAACCAGAAAGATGTGA

Publications

PMID - Link Title
No publications available for this retrocopy