Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104671369P2
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr7:128177307-128178875  UCSC
Strand -
Parental Sequence XM_030922150.1
Parental seq. overlap 1325 bp
Parental seq. overlap (%) 51.5%
Genomic Region Intergenic
Retrocopy Summary LOC104671369P2, located on chr7:128177307-128178875, is a retrocopy of the parental gene LOC104671369. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104671369
Full Name N/A
Also known as LOC104671369
Coordinate chr18:6377297-6410928
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TFDP3
Chimpanzee Pan troglodytes TFDP1P5
Bonobo Pan paniscus TFDP1P4
Gorilla Gorilla gorilla TFDP1P4
Orangutan Pongo abelii TFDP1P4
Gibbon Nomascus leucogenys TFDP1P4
Green monkey Chlorocebus sabaeus TFDP1P4
Crab-eating macaque Macaca fascicularis TFDP1P4
Rhesus Macaca mulatta TFDP1P4
Baboon Papio anubis TFDP1P5
Marmoset Callithrix jacchus TFDP1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104671369P2
CGTGGCCGTTCACCCGTCCACCATAAACCCGCTCGGGAAGCAGCTCTTGCCGAAAACCTCTGGACAGTCCAATGTCAGTATTGACCAGCAAGTGGTAATTGGTATGCCTCAGAGACCGGCAGCATCAAACATCCCTGTGGTAGGAAGCCCAAGCCCACCCAGCAGTCACTTTCCCTCTCAGAACCAGCCTTCCTGCTCCTCACCTCAGTGGGCCAGGCAGCACaacaggaaaggagagaagaatggcATGGGCTTGAGCCATCTTTCCATGAAGGTCTGGGAGACGGTGCAGAGGAAAGGGATCACTTCCTGCAAGGAAGTGGTGGGCGAGCTGGTCGCCAAGTTCAGAGCTGCCAGCGACCACGTCTCACCAAACGAGTCAGCTTATGTCGTGAATAACATAAAACGGCGCACCTACGATGCCTTAAACGTGCTGATGGCCATGAATGTCATCtccagggagaaaaagaagatcAAGTGGATTGGTCTGACCACCAGCTCAGCTCAGAACTGTCAGAACTTACAGGTGGAAAGACAGAAGAGACTtgaaagaataaagcagaaaCAGTCTGAACTTCAACAACTTATTCTACAGCAAATTGCCTTCAAGAACCTGGTACTGAGAAACCGGTATGTGGAGGAGCAGGTCAGTCGGCAGCTGCCGCCCAACTCAGTCATCCACCTGCCCTTCATCGTCATCAGCACTAGCAAGAAGACCGTTGTCGACTGCAGCATCTCTGACGACAAATTAGATTATCTGTTTAAGTTTGACAACTCATTTGAAATCCACGATGACAGGCAAGTGCTGATGTGGATGGGCATGACTTTTGGACTAGAGTCCGGGAGCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTTTGGTCCCAAAGGCTCTGGAGCCGTACGTGACAGAAATGGCTCAGGGAACTTTTGGAGGTGTGTTCACGATGGCAGGTTCCACGTCTAATGGCACGCGGCCCTCTGCCAGTGACCTGACCAACGATATGGATGAGATGCCGGCCACAAGCTCCAATGGGTCTCACTACAGTGGCTCCAGAGTGGAGACCACAGCagtccaGTCCTCTCCACTTCAAATTCAGCTTCGGGAAAACATTTAgggaaaagaaacttttttttgttaaatgtgaggttttctgtttcttttttgccTACTCTCAAGAAGATATTGGTAAGCTGTAGAATTTAGATGTGCACCTCTGATAAGCAAGGATTGTTTCCCGTATGATTAAGACGTGCTGTTGATGTGTGTTTTGATACCAGTGTGCTGACGCAGAggctttatttacttttcaggattttgtgttttcattttctatttttctttaaatgcagAGTTCATTGTTGCCCCTTAACAGTTTTTGCTGAGTTTAGTGAAGAAATTGTACTTCATCCACatccatgaaaataaaatgctctCCTGTTGTGCACAGTGAGTACCAAATACCGTTTATTTGCCATGGGTTTGGAGGGCACCCCCA
>XM_030922150.1
GGAGAAGGTGGCGCAATGTTGAGTGTCCACAGGGGAGCTGGTAGGAGGCGGTGCGGTGATGAGTGTCTGCAGGGGATCCTGTGGGAAggcagtgcagtgGCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTCAGTCCCGGAAAAGGCGTGGTGTCCCTCGTGGCCGTTCACCCCTCCGCTGTCAACCCGCTCGGGAAGCAGCTCTTGCCAAAAACCTTTGGACAGTCCAATGTCAACATTGCCCAGCAAGTGGTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGGGAAGCGCaacaggaaaggagagaagaatggcAAGGGCCTGCGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTTCCTACAACGAAGTGGCGGACGAGCTGGTCGCGGAGTTCAGTGCTGCCGACAACCACATTTTACCAAACGAGTCAGCTTATGACCAGAAGAACATAAGACGGCGCGTCTACGATGCCTTAAACGTGCTGATGGCCATGAACATCATCTccaaggagaagaaggagatCAAGTGGATTGGTCTGCCCACCAACTCTGCTCAGGAGTGTCAGAACTTAGAGGTGGAAAGACAGAGGAGActtgaaagaataaaacagaaacagtCTCAACTTCAAGAACTTATTCTACAGCAAATTGCCTTCAAGAACCTGGTGCAGAGAAACCGGCATGCGGAGCAGCAGGCCAGCCGGCCGCCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAGCAAGAAGACAGTCATCGACTGCAGCATCTCCAATGACAAATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCCATGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGTGGACTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCATACGTGACAGaAATGGCTCAGGGAACTGTTGGAGGCGTGTTCATCACGACGGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAGTGACCTGACCAACGGTGCAGATGGAATGCTGGCCACAAGCTCCAATGGGTCTCAGTACAGCGGCTCCAGGGTGGAGACCCCGGTGTCCTACGTCGGGGAGGACGATGAGGAGGATGATGACTTCAATGAGAATGACGAGGACGACTGATGTCCTCCCCACTTCAAATTCAGCTTCAGGAAAACGTTTaggaaaagaaactttttttttaatgtgggttttctgttccttttggcCTACTCCCAAGAAGATATTGGTAAGCTATTGAATTTAGATATGCACCTCTGATAAGCAAGGATTGTTTCCCGTAGGATTAGGATGTGCTGTGGATGTGTGTTTTGATACCAGTGTGCTGATGCAGAgcgtttatttactttttaggattttgtgttttcatttgctatttttctttaagtGCAGAGTTCATTTTTGCCCCTGAAAAGTTTTTGCTGAGTTTGCTGAAGAAATTGTATTTCATCCACatccatgaaaataaaacaccCTCCTGTTGTGGACGGTGAGCACCTGATGCCGCTTATTTGCCGTGAGTTTGGACGGCGCCCCCGATGCCACTTATTTGCCGTGAGTTTGGACGGCGCCCCCGATGCCACTTATTTGCCGTGAGTTTGGACAGCGCCCCTGCTGGCGGATAGCGAGACTGTGGCGTTTGTTCAGTGGTACAGTGTCCAAGCAAACAGCAGAATTCGactttttaaacaataaacaCCATCAACCTTATTGACTTTATTGTCCCTTAAATTATATTGACTGTTGTGATTCCATCAAGTTTATACACTCTTTTCTCCCTATTTTGCAGCAACAAATTGCGaagtgcttttgtttgtttgtttttgtttggttaaAGCTTATTGCCACGCTGGTGCGGCTATGGAGACTGTCTGGAAGGCTTGGAATGGTTTATTGCTTATGGTAAAATTTGCCTGATTTCTTACAGGCAGCGTTTGGAAACCTTTTATTATATAGTTGTTTACATACTTATAAGTCTATCATTTAAAGACATCTACTGAAACAAATGTATTTGTTTCATAAGCATCTTCCTGTAATCtattataaaattgaaattaaatatagagaatgttttaacaattttttaactcaaaatttgtcaatcatttttaatagttctttttttataaaaagaaaaaggaatttaaggACAGGCAGtagtctcttttaaaatttattcacaaAACCCATTAACTGCACAGTTGCTATTAGCTGCCTGTTCTAAAACGATAGTCTTTTTATTGAAACACAAATAaacttttctgtaatattttatggAATATAAAGAGACTTTAATTGTTTGACTTGTTTAACTTGGCACTGttagtttttattaataaaacgCGCATGGGCATTTTAAACAA

Publications

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