Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104671759P8
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr14:29908462-29908749  UCSC
Strand +
Parental Sequence XM_030932281.1
Parental seq. overlap 248 bp
Parental seq. overlap (%) 5.9%
Genomic Region Intergenic
Retrocopy Summary LOC104671759P8, located on chr14:29908462-29908749, is a retrocopy of the parental gene LOC104671759. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104671759
Full Name N/A
Also known as LOC104671759
Coordinate chr6:4078132-4161315
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens DNAJB6P3
Gibbon Nomascus leucogenys DNAJB6P11
Green monkey Chlorocebus sabaeus DNAJB6P4
Crab-eating macaque Macaca fascicularis DNAJB6P9
Rhesus Macaca mulatta DNAJB6P9
Marmoset Callithrix jacchus DNAJB6P5
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104671759P8
GAGGGATCCCCAAGGAAGCAGAGGCCAAGGGATATGGTCACTTTTCTCTACCTGCACTGGATTTCCATCTTTTGGAagtagattttcttcttttgatacaGGATTTATTTCAATCGGGTCACTAGGTCACAGGGGGCCTTACTTCATTCTCTTCCATGTCCTTTGGGGGTAGTGGGATGGGCAACTTCAAATTGATATCAAATTCTACTAAAATGGTTAACAGcagaaaaaccacaatgaagaGAATTGTCAAGAAAGAGTAGAAGTTGAAGATGACAGCCAGTTAAA
>XM_030932281.1
tgggagaaaggagagaaaggaaagcgCGAGGAGACGCCGCCACCACCAGCGCAGCAGTGCAGGAGCTGTGAGGAGATTCGGGCAGTCACCCCGCCTCTCCTGCGTCCCGACACCTGCCGTCCCCGTCCTCGAATCTGCACCGTAGTTGATGCAACTGAAGTTTATGTAACAAGTTTATATGAACTCCTACCCGGCTGAGGAAGGACCCATTCCAACAATCTCTTAAAACATGGTGGATTACTATGAAGTTCTAGGCGTGCAGAGACATGCCTCACCCGAGGATATTAAGAAAGCATATCGGAAACTGGCACTGAAGTGGCATCCAGATAAAAATCCCGAGAATAaagaagaagcagagagaaaattcaaacaaGTAGCGGAGGCATATGAAGTGCTGTCGGATGctAAGAAACGGGACATCTATGACAAATATGGCAAAGAAGGATTAAATGGTGGAGGAGGAGGTGGAAGTCATTTTGACAGTCCATTTGAATTTGGCTTCACATTCCGCAACCCAGATGATGTCTTCAGGGAATTTTTTGGTGGAAGGGACCCATTTTCATTTGACTTGTTTGAAGACCCTTTTGAGGACTTCTTTGGGAATCGAAGGGGTCCCCGAGGAAGCAGAAGCCGAGGGACGGGGTCGTTTTTCTCTGCGTTCAGTGGATTCCCGTCTTTTGGAagtggattttcttcttttgatacaGGATTTACTTCATTTGGGTCACTAGGTCATGGGGGCCTCACTTCATTCTCTTCCACGTCatttggtggtggtggcggcATGGGCAACTTCAAATCGATATCAACTTCAACTAAAATAGTTAATGGCAGAAAAATCACTACAAAGAGaatTGTCGAGAACGGTCAAGAAAGAGTAGAAGTTGAAGAAGACGGCCAGTTAAAGTCCTTAACAATAAATGGTGTGGCCGACGAGGACGCCCTCGCTGAGGAACGCGTGCGGAGAGGCCAGAGCGCCCTGCCAGCCCAGCCTGCCAGCCTCCGCCCGCCGAAGCCGCCCCGGCCTGCCTCGCTGCTCAGACATGCGCCTCACGGTCTCTGTGAGGAGGAGGGCGAGCAGGACCGACCTCGGGCACCCGGGCCCTGGGACCCCCTCGCGTCCGCAGCAGGTGTGCAAAGGGAGGCAGCCGAGGAGCAGGCGCAGAGTGAGACTGCCCTGGGTGCCAGAGGACAGCGAGGACACAAACCGCGCCTGTGCTGCTGTGTTCTGACCTGAGCGGGCGGGGCGGGCGGGGCGGGAGGAGGTGGCTTCGCTCTGTTCCCCTCCTGCCTGCAGCCCCCACGCCACGGTGGCTCCGGGCCCCCCACCGTTCAAACGGGGTCCCCGTGTCCTTTACACAGTGTGTTGCTCCGCAAAGGATGACAGAGCTGCCATGGCAGTGCGAGGTGCTGCTTTTACCGTAGACGTGCCTTTCCGTAGCTTTCAGCGTAGAGCTTGAGGCCTGTGGCTTAGGCCAGGGGGTCTTGTGCTGGGGGGCTCTGCATCTGCTCCTGCCCCACCGTCAGCTTCACCTTCTCGTGCCTTCTTCTGCGCTGGGTGCAGAACAAAAGAGCCCCTCAAGTCAGACCTGCTTGTGAAGCGTAGTCTGCCCGCCCACCCGCTGTGGGGTTCTTGGCCACCCTGCTCTCCCCCCACCTCTTAGGGAGCCGGAGAGTCTCAGAAGTGAGTGCCCCGGAGAAGTTCTGGGTCGCCCTGAGGACGTGCTGCGCGTGTAGAGTTGGCCCTGACTGCGTCCTAAAGCCCAGGGTCTGTTTCGTGTGAATCGTGCATCGGTTGGAAGTATTTGTGCCCCTTCTGGTTCTTACCACTGCACGCAGTGAGGGGACCCCAGCCGCTCCTGTCGTGCAGGAAGATAGGGATGGCTGATCTCTGGGTTTGGGGGACCTAAGCGGGTGTCGTGAGGTTAATTCTGTGGACTTGGGCCGAACAGCACTGTCTAAGCATGACATGAAAAGAAGGGGGGAGgtctctcccttttccttcatggaactttcttttgaaaaattagccCCTTCCAGACCTTCTTGGATGAAGCACAGTTGCCGGTTACGCTTCTGAGGAGGACGGAAGGTGCACCCCCAGCCATGAGAGCCTCAGGATGCGATGCCTGTGGGTGGGCCCAGCAGCCCCTCCAGCTGGCCGGCCGCCCACCCTGCTGTGCTCGACTTTGCCATGCGAGTCTGCGCTGTGTCACTGAGTGACGAACAGAGGCAGTTGCAGGCTGCGTGGCCCAGAAAGAACTCCCCATGCACTGAGTGGGCGTGGAGGAGGCTCCCCAGGATCCCTGCACTGAGCGAAGGCGGGGAGGGCTCCCCAGGATCCCTGCACTGAGCGGGCGTGCGGGAGGCTCCCCAGGATGTGTTGTGCACTCCTGGTACTGAAGGGTCTGAGGGCGGTAGGGAGAGCGCACTGTTTGTCGATGGGTCTTTGCAAGGTGCAGGATAGAGCAGGGTCACAGCCGTAGTGTCCCTGAACCACTGGGGTTAGGGGGCCACCGGAAGCCTGGCCTGCGAGGCGCCTTGTGATTTCCCAGGCCCCAAGAATGTGGTGCACAGGTGCGAGCCTCCTGGAGGAGCCATGTTTAAAGTGAGGTGAGACCCCTGGAacagcacccagcacaggccTGAGGCCACACCCGCATTTCAGAACTGGGCTGGTCTCCTCCTCCCAGCGACTGTGGCTGTGGGTGGGACTGATGTGGGCAGGCAGGCGCCCTTCTCCCTGCGCCTCACGGCTTTGCCAGTGTGTATCCTCAGCTTCCCTGCCATGCACCGTTTCTGAGGGGGAAAGCTGGCTGACTGCTGAATCCCAACACAAATCCTTACAGCAGAGAGGCCAGTGATGGCTTTTGTTTCTGCCCGGATCCTCTTTGTGGAGCTTCCGTCCCAGAGCTTTTCCtctcatttgtttccttttttttaatcgCTTCATGAGATCTTGAAGATACCAGAGTAACCATCAAAGATTTAAAGATGAGATtttcatacaaatatataatgaacacATGTCAGAGACTTTTACTTAAGTTCTTATTGAGAGATGACAGAGCTGACTCAATGGATGATTCAGGAAGCTGCTGCAGAGTTGGAGACAGAACTAGGGTGAAATTGCAAAGCAGGGTGGTTTTGGTCTCTGCAGAGGCCATTTGCTACTCACTCACCGACTCCAGGGTGCTGGTGGGTGACAAGGAAGAGGCTGAGCAAGGCTCACTCATTGCATCGGGGTCAGAGCACCGGCACCACCAAACCGGAACAACTGTACATGCCTGCAGACAAGGGCATGTGCCAGTGTGGGCATGACAGAGTCACACAGGTGCAGACCCCTCAGCTCCAGCCTGCTGGGTGTTCTGACCAGTGGACTTTGTAGCGATAACACAGGCTCCTGAGTCAGGATACTGGTTTGCTGCATTTTTGTGTCACTGAAGGTCTCTCTTTCCCTGAAGCCCCTTGTCACGGAAAACCCATGACTCTCGGCCAGGCTTCTGGGTGCCTGGAAGATCCCACTATCATCTTTTTGTGGGATTCCTGGGCAAGGTTCCTGAAAAAGGAGTACACGGTGAGGAGACCGGCCACCCAGCAGTATTGATGgcccctgctttggcctccagCTATCTGAATGGTCCCTGAATCGAGTAGGTCTTATTGGAGCTCCCAGGAGTGAGCGAGCTTCCATTCGTGGAGTCACAGCCAGGTGTGCAGCCCCCAGGCCTGGGCGGTTCTagggcatgatttttttttaggcTGGAAATGAGCTCTCACTTGAGATGCACCCCTCAAAATACGGAACGTACTGCTTCTGCAAGAATTTCCCCTCCTTGTGTCTGGTGTGATTGACAACGGGGTGCAGCCAGTGGAAGCAGGAATGTTGGGGAGTACAGGGTACTGGGGGTGCTCCTATCCCGGTCAGCAGAGCGGCGGGTTGGCGGGGAGCACCTGTCCCTCCTGCGTGGTGTGGGGTTCTCTGGCTAACATTTGCCGCTGTGTGGAGTCCTTAACCCCAGCACTCGCCCTGCCTTAGTTCAGAGGACAGAGGCACCACTGGGAACCCACCCGATCCTAACTCAGGCTTTGGAAAGGACGAGTGAGATTTTGTGTTTATGAATTCCACACATACTGTAGGAATATCAAGAACATGTAactgttaaaaaa

Publications

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