Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104673976P18
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr16:52303393-52303784  UCSC
Strand -
Parental Sequence XM_010378163.2
Parental seq. overlap 315 bp
Parental seq. overlap (%) 38%
Genomic Region Intergenic
Retrocopy Summary LOC104673976P18, located on chr16:52303393-52303784, is a retrocopy of the parental gene LOC104673976. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104673976
Full Name N/A
Also known as LOC104673976
Coordinate chr17:7229362-7232501
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS27AP14
Chimpanzee Pan troglodytes RPS27AP12
Bonobo Pan paniscus RPS27AP13
Gorilla Gorilla gorilla RPS27AP13
Orangutan Pongo abelii RPS27AP14
Gibbon Nomascus leucogenys RPS27AP1
Green monkey Chlorocebus sabaeus RPS27AP10
Crab-eating macaque Macaca fascicularis RPS27AP17
Rhesus Macaca mulatta RPS27AP17
Baboon Papio anubis RPS27AP14
Mouse lemur Microcebus murinus RPS27AP9
Horse Equus caballus RPS27AP5
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104673976P18
AGGCCAAGATTCAGGATAAGGAAGAAATGCCTCCTGACTAGCAAAAAATGATCTTCAGTGGCAAACAACTAGAAGATGGACATCCTCCGTCTGACCACAAAATTCAAAAGGGGTGCACTCTCTATCTTATGTTGAAGTTTTGTGGTGGCGCTAAAGAAGAAGTTTTATACAAGtcttaagaaaaataagtataaGAGAAAGAGGGTGACACTGGCTATCTTGAAATACTGTATGGTGAATAAGAATGACAAAAACTAGTCACCTTCATTGGAAGTGCCCTTCAGATGAATGTGGTGCTAGAGTTTTTAATGGCCAGCCACTTTGACAGATATCACTGTGGCAAATGTTTTCTGATCTACTATTTCAACAAACTAGAATGCAAGTAATTGTAC
>XM_010378163.2
CGACTCACCTCCTTTTAAAGATTCTCTTAGCCACGTTGACTGCACGGgaaaaacctttttaaaacattttttacgTTGCTTAAACCTACCATTTCGAAAGCATTCCGAAGGCTAAAGTGAGAAATAAGCCCAGGTTAGGGAGAGGAGAAACGAGTTTCACGTCCTGGCCTAGCACCGGGTTGGATTGTCGCTGGGACGGCAGTCAGGCATTTGGTGTGGTCGCCTAAGAGGTGGGTCTTTCGGCTGGGGCGCCGGGAAACCCCGTGGGCCTGCGCGGCGTTCTTCCTTTTCGATCCGCCATCTGCGGTGGAGCCGccaccaaaatgcagattttcgTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGgaATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGtgctaagaaaaggaagaagaagtcTTACACCACTCCCAAGAAGAATaagcacaagagaaagaaggTTAAGCTGGCTGTCCTGAAATACTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCGTCTGATGAATGTGGTGCTGGGGTGTTTATGGCAAGCCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACTTACTGCTTCAACAAGCCAGAAGACAAGTAACTGTATGAGTTAATAAAAGACACGAACTAACA

Publications

PMID - Link Title