Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104675132P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr5:60582732-60582914  UCSC
Strand +
Parental Sequence XM_030922649.1
Parental seq. overlap 157 bp
Parental seq. overlap (%) 2.6%
Genomic Region Intragenic (LOC104664872)
Retrocopy Summary LOC104675132P1, located on chr5:60582732-60582914, is a retrocopy of the parental gene LOC104675132. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104675132
Full Name N/A
Also known as LOC104675132
Coordinate chr19:46541096-46568935
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla MYH2P1
Gibbon Nomascus leucogenys LOC100599179P1
Baboon Papio anubis MYH2P1
Mouse lemur Microcebus murinus LOC105878349P1
Pig Sus scrofa MYH4P1
Cow Bos taurus MYH4P1
Sheep Ovis aries MYH2P1
Dolphin Tursiops truncatus MYH1P1
Greater mouse-eared bat Myotis myotis MYH4P1
Egyptian rousette Rousettus aegyptiacus MYH4P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104675132P1
TGCCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCTCACCTGGAGCGCATGAAGAAGAacatggagcagaccattaagGACCTGCAGCACCGGCTGGACGAAGCCGAGCAGATCGCCCTCAAGGGCGGCAAGAAGCAGCTGCAGAAGCTGGAAGCGCGGGTGCGGGAGCTGGA
>XM_030922649.1
GGACGGGCCTTTCAAGAGGGACACCGGTCACACCGCCCAGTGTCAGCAGCAGCTGCTAGTTCTGAACTGTCTCACTCCCAGGCTGCATCTTCTCACTTGGTAACAAGGACCTCAGAGTTCAGCAGCCATGAGTTCAGACTCAGAAATGGCTGTTTTTGGGGAGGCTGCTCCTTACCTCCGAAAGTCTGAAaaggagcgcattgaggcccagAATAGGCCCTTTGATGCCAAAACGTCTGTCTTTGTGGCGGAGCCCAAAGAATCCTTTGTCAAAGGAACCATCCAgagcagagaaggaggaaaagtgaCAGTGAAGACTGAGGGAGGAGCGACTCTGACAGTGAAGGATGATCAGGTCTTCCCCATGAACCCTCCCAAATATGACAAGATCGAGGACATGGCCATGATGACTCACCTGCACGAGCCTGCTGTGCTGTACAACCTCAAAGAGCGTTATGCAGCCTGGATGATCTACACCTATTCAGGTCTCTTTTGTGTCACTGTCAACCCCTACAAGTGGCTGCCAGTGTACAACCCCGAGGTGGTGACAGCCTACCGAGGCAAAAAGCGCCAGGAGGCCCCGCCCCACATCTTCTCCATCTCTGACAACGCCTATCAGTTCATGCTGACTGACCGAGAGAATCAGTCAATCCTGATCACTGGAGAATCTGGTGCAGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTTACtggggagaagaagaaggaagaagttaCTTCTGGCAAAATACAGGTGAGGACTCTGGAAGATCAAATCATCAGTGCCAACCCCCTACTGGAGGCCTTTGGCAACGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTTGGTAAATTCATCAGAATCCACTTTGGCACTACTGGAAAACTGGCATCTGCTGATATTGAAACATATCTGCTAGAGAAGTCTAGAGTTACTTTCCAGCTTAAGGCTGAGAGAAGTTATCATATTTTTTATCAGATTACATCGAATAAGAAACCAGAACTAATTGAAATGCTTCTGATTACCACGAACCCATATGACTACCCATTTGTCAGTCAAGGGGAGATCAGTGTCGCCAGCATCGATGATCAGGAAGAATTGATGGCCACAGATAGTGCTATTGATATTTTGGGCTTTACCAATGAAGAAAAGGTCTCCATTTACAAGCTCACGGGGGCTGTGATGCATTATGGGAACCTGAAATTTAAGCAAAAGCAGCGTGAGGAGCAAGCAGAGCCGGATGGCACAGAAGttgCTGACAAGGCGGCCTATCTCCAGAGTCTGAACTCCGCAGATCTGCTCAAAGCTCTCTGCTACCCTAGGGTCAAAGTCGGCAATGAGTTTGTCACCAAAGGCCAGACTGTAGAACAGGTGACCAATGCAGTGGGTGCTCTGGCCAAAGCCGTCTACGAGAAGATGTTCCTGTGGATGGTCGCCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATCGGGGTCTTGGACATTGCTGGTTTTGAGATTTTTGATttcAACAGCCTGGAGCAGCTGTGCATCAACTTCACCAATGAGAAATTGCAACAGTTTTTCAACCACCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGAAGGAAGGCATCGAGTGGACGTTCATTGACTTCGGGATGGACCTGGCTGCCTGCATTGAGCTTATCGAGAAGCCTATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACAGACACCTCCTTCAAGAACAAGCTGTATGACCAGCACCTGGGCAAGTCTGCCAACTTCCAGAAGCCCAAGGTGGTCAAAGGCAAGGCCGAGGCCCACTTCTCTCTGATTCACTATGCTGGTGTTGTGGACTACAACATCACTGGCTGGCTGGAGAAGAACAAGGACCCCCTGAATGAGACCGTGGTGGGGCTGTACCAGAAGTCTGCAATGAAGACTCTAGCTCATCTCTTCTCTGGGACTCAAACTGCTGAAGCAGaaGGTGGAGGGCCCAAGAAAGGCGGTAAGAAGAAGGGCTCTTCTTTCCAGACAGTGTCTGCGCTTTTCAGAGAGAATTTGAACAAGCTGATGACCAACCTCAGGAGTACCCATCCTCACTTTGTGAGGTGCATCATCCCCAATGAGACTAAAACTCCTGgTGCCATGGAGCATGAACTTGTCCTGCACCAGCTGAGGTGTAACGGTGTGCTGGAAGGCATCCGCATCTGTAGGAAAGGATTTCCAAGCAGAATCCTTTATGCAGACTTCAAACAGAGATACAAGGTATTAAACGCAAGTGCAATCCCTGAAGGACAATTCATTGATAGCAAGAAGGCCTCTGAGAAGCTCCTTGCATCCATCGACATTGACCACACCCAGTATAAATTTGGACACACCAAGGTCTTTTTCAAAGCTGGTCTTCTGGGGCTCCTAGAGGAGATGCGAGATGACAAGCTGGCCCAGCTGATTACCCGAacccaggccaggtgcagagggTTCTTGGCAAGAGTGGAGTACCAGAGGATGGTGGAGAGAAGGGAGGCCATCTTCTGTATCCAGTACAATATCAGAGCCTTCATGAATGTCAAGCACTGGCCCTGGATGAAACTCTTCTTCAAGATCAAGCCTCTGCTGAAGAGTGCAGAAACTGAGAAGGAGATGGCCACCATGAAggaagaatttcagaaaattaaagatGAACTTGCCAAGTCAGAGGCAAAAAGGAAGGAACTGGAAGAAAAGATGGTGAcgctgttgaaagaaaaaaatgacttgcaGCTCCAAGTTCAGGCTGAAGCTGAAGGCTTGGCTGATGCAGAGGAAAGGTGTGACCAGCTGATCAAAACCAAAATCCAGCTAGAGGCCAAAATCAAAGAGGTGACAGAGAGAGCTGAGGATGAGGAAGAGATCAATGCTGAGCTGACAGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAACTCAAGAAAGACATTGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAACATGCCACAGAAAACAAGGTGAAAAACCTCACAGAAGAGATGGCAGGTCTCGACGAAACCATCGCTAAGCTGACCAAGGAGAAGAAGGCTCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAGGAGGACAAAGTCAACACTCTGACCAAAGCTAAAATCAAACTTGAACAACAAGTGGATGATCTTGAAGGGTCCTTGGAGCAAGAAAAGAAACTTCGCATGGACCTAGAAAGGGCTAAGAGGAAACTTGAGGGTGACTTGAAGTTGGCCCAAGAGTCCATAATGGACATTGAAAATGAGAAACAGCAACTTGATGAAAAGctcaaaaaGAAAGAGTTTGAAATCAGCAATCTGCAAAGCAAGATTGAAGATGAACAGGCACTTGGTATTCAATTGCAGAAGAAAATTAAGGAATTGCAAGCCCGCATTGAGGAGCTGGAGGAAGAAATCGAGGCAGAGAGGGCTTCCCGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGTGAGAGGCTGGAAGAAGCCGGTGGGGCCACCTCAGCCCAGATTGAGATGAACAAGAAGCGGGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACCCTACAGCATGAAGCCACGGCAGCCACCCTGAGGAAGAAGCACGCAGACAGCGTGGCCGAGCTTGGGGAGCAGCTTGACAACCTGCAGCGAGTGAAGCAGAagctggagaaggagaagagTGAGATGAAGATGGAGATTGATGACCTTGCTAGTAATGTAGAAACGGTCTCCAAAGCCAAGGGAAACCTAGAGAAAATGTGCCGGACTCTAGAGGATCAAGTGAGTGAACTGAAATCAAAGGAAGAGGAGCAGCAGCGGCTGATCAATGACCTGACTGCGCAAAGGGGGCGCCTGCAGACTGAATCTGGTGAATTTTCACGCCAGCTTGATGAAAAGGATGCTCTGGTGTCTCAGTTATCAAGGGGCAAACAAGCTTTTACTCAACAGATTGAAGAATTAAAGAGGCAACTTGAAGAGGAGATAAAAGCCAAGAACGCCCTGGCACATGCCCTGCAGTCTTCCCGCCATGACTGTGACCTGCTGCGGGAACAGTATGAGGAGGAGCAGGAATCCAAGGCTGAGCTGCAGAGGGCGCTGTCCAAGGCCAACACCGAAGTTGCCCAGTGGAGGACCAAATACGAGACGGACGCCATCCAGCGCAcagaggagctggaggaggccaAGAAGAAGCTGGCCCAACGGCTACAGGCTGCTGAGGAACATGTAGAAGCTGTGAACGCCAAATGTGCTTCCCTTGAAAAGACGAAGCAGCGGCTGCAGAATGAGGTCGAGGACCTCATGCTTGACGTGGAGAGGACAAATGCCGCCTGTGCCGCCCTTGACAAAAAGCAAAGGAACTTTGATAAGATCCTGGCAGAATGGAAACAGAAATATGAGGAAACGCATGCCGAGCTTGAGGCCTCCCAGAAGGAGGCCCGTTCCCTTGGCACTGAGCTGTTCAAGATGAAGAATGCCTATGAGGAATCTTTGGATCAGCTAGAAACCCTGAAGCGAGAGAACAAAAACTTACAGCAGGAGATTTCTGACCTCACGGAGCAGATTGCAGAAGGAGGGAAACGTATCCATGaactggagaaaataaagaaacaagtgGAACAAGAAAAATGTGAACTTCAGGCTGCTTTAGAAGAAGCAGAGGCATCTCTTGAACACGAAGAGGGAAAGATCCTGCGCATCCAGCTTGAGTTGAACCAAGTCAAGTCTGAGGTCGATAGGAAAATTGCtgaaaaagatgaggaaattgaccAGCTGAAGAGAAACCACGTTAGAATCGTGGAGTCCATGCAGAGCACGCTGGATGCTGAGATCAGAAGCAGGAATGATGCCATCAGGCTCAAGAAGAAGATGGAGGGAGACCTCAATGAAATGGAAATCCAGCTGAACCATGCCAACCGCATGGCTGCCGAGGCCCTGAGGAACTACAGGAACACCCAAGGCATCCTCAAGGATACCCAGCTCCACCTGGATGATGCTCTCCGGAGCCAGGAGGACCTGAAGGAGCAGCTGGCCATGGTGGAGCGCAGAGCCAACCTGCTGCAGGCTGAGATCGAGGAGCTGCGGGCCACTCTGGAGCAGACAGAGAGGAGCAGGAAAATCGCAGAACAGGAGCTCCTGGATGCCAGTGAGCGTGTTCAGCTCCTCCATACCCAGaacaccagcctgatcaacaccaAGAAGAAGCTAGAGACAGATATTTCCCAAATGCAAGGAGAGATGGAAGACATTCTCCAAGAAGCCCGCAATGCAGACGAGAAGGCCAAGAAGGCCATCACTGATGCCGCCATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGTGCCCACCTTGAGCGGATGAAGAAGAACATGGAGCAGACGGTGAAGGACCTGCAGCTCCGCCTGGATGAGGCTGAGCAGCTGGCCCTGAAGGGTGGGAAGAAGCAGATCCAGAAactggaggccaggGTACGGGAGCTGGAAGGAGAGGTTGAGAGTGAGCAAAAGCGTAATGCTGAGGCTGTCAAAGGTCTGCGCAAACATGAGAGGCGAGTGAAGGAACTCACTTACCAGACGGAAGAAGATAGAAAGAATATTCTCAGACTTCAAGATTTGGTAGATAAACTTCAGGCAAAAGTGAAATCTTATAAGAGACAAGCTGAGGAGGCTGAGGAACAATCCAACACCAATCTAGCTAAATTCCGCAAGCTCCAGCATGAGCTGGAGGAGGCCGAGGAACGAGCTGACATTGCTGAGTCCCAGGTCAACAAACTGCGCGTGAAGAGCCGGGAGGTTCACACAAAAGTCATAAGTGAAGAGTGACCATGTCCTGATGCCATGGAGTGACTGAAGACAGGCACAAAATGTGACAACTTTGGTCATTTCCCTCTGTCATTATTGTGTATTCTACCCTGTTGCAAAGGAAATAAAGCATAGGGTAGTTTGCAAACAATA

Publications

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