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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104676747P28
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr20:3173343-3173777  UCSC
Strand -
Parental Sequence XM_010381625.2
Parental seq. overlap 342 bp
Parental seq. overlap (%) 34.6%
Genomic Region Intragenic (HS3ST4)
Retrocopy Summary LOC104676747P28, located on chr20:3173343-3173777, is a retrocopy of the parental gene LOC104676747. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104676747
Full Name N/A
Also known as LOC104676747
Coordinate chr14:36463058-36521315
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HSPE1P16
Chimpanzee Pan troglodytes HSPE1P25
Gorilla Gorilla gorilla LOC101151505P25
Orangutan Pongo abelii HSPE1P20
Gibbon Nomascus leucogenys LOC100605912P4
Green monkey Chlorocebus sabaeus LOC103217585P5
Crab-eating macaque Macaca fascicularis LOC102147033P25
Rhesus Macaca mulatta HSPE1P21
Baboon Papio anubis LOC101019904P27
Marmoset Callithrix jacchus LOC100385103P25
Bonobo Pan paniscus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104676747P28
TCATGGCAGGGGAAGCATTCAGAAAGTTCATTCTGCTCTTTGACCAAGTATTGGTTAAAAGGAAAGCAGTTGAAACTGTAACCAAAGGAGGCATATGCTTCCAGAAATATCTCATGAAAAAATATTGCAAGCAACAGAAGTAGCTGTTGGATCGGGCTCTAAAGTGAAGGTTGAAGAGATTCAAACAGTTAGCATGAAAGTTGGTGATAAAGTTCTCCAACTTTGGTGCCAGAATATGCAGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAAGATGCAGGCACCAAAGTGGTGCTAGGTGACAGGAATTATTTCTTATTTAGAGATGGTGACATTCTTGGGAAGTATGTAGACTAAAATAGATCACTATTGAAATCAACATGAGCTCATGCATTCCACTGAAGTTCTGAAATCTTTCATCATGTAAATAATTTT
>XM_010381625.2
CCGTGCAGGGTGTGCTAGCGCGCTTAGCCCTCTCCGGCCAGCTTAGGCTAGTTCCCGGGCCGCGCTCAGTTCCAGAACTTTCCGGAAAGTGCCGCGCTCCCTACGGGTCAAGGGTAAAATCGCGTCATTTCCGGGAGGGGATGAAGGGGTAGTTCTTTCACCTCGGCTGGGCGCCTAGAAAAGCCTAGAAACAGCTCCTTTTTTCTTCCGCCTCCGAGTCTTCGCGTCAGCGGCCTGCGCAGGGCCCTTGGGGCGAATCGCGGCGCGCGTCGGGGCGACCGCCCTTCCTCGCGGGGAGGGGCGAGGGGGCTAGCGGCGGGGGTTGGGGCGAGCGCGCCTGCGCGCTGGGCGGTTTTTTCACGTGTCGCCAGGGCCGGACCGCGAGTCTCTCCTTGCGGCGCTACACAAGAGCAGAGTACGAGTCTGAGGCGGAGGGAGTCATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAACCAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTAAAGGAAAGGGTGGAGAGATTCAACCGGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTGCCAGAGTATGGAGGCACCAAAGTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGAAATAAGTCACTATTGAAATGGCATCAACATGAAGCTGCCCATTCCACTGAAGTTCTGAAATCTTTCATCATGTAAATAATTtccatatttctcttttataataaacTAATGATAACTAATGACATCCAGTGTCTCCAAAATTGTTTCCTTGTGCTGATacaaacatttccaaataaaaatatgtaaatga

Publications

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