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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104678523P6
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr12:62384098-62384334  UCSC
Strand -
Parental Sequence XM_010383841.2
Parental seq. overlap 198 bp
Parental seq. overlap (%) 35.7%
Genomic Region Intergenic
Retrocopy Summary LOC104678523P6, located on chr12:62384098-62384334, is a retrocopy of the parental gene LOC104678523. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104678523
Full Name N/A
Also known as LOC104678523
Coordinate chr13:123636607-123671051
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBE2V1P17
Chimpanzee Pan troglodytes UBE2V1P2
Bonobo Pan paniscus UBE2V1P2
Gorilla Gorilla gorilla UBE2V1P2
Orangutan Pongo abelii UBE2V1P1
Gibbon Nomascus leucogenys UBE2V1P10
Green monkey Chlorocebus sabaeus UBE2V1P16
Crab-eating macaque Macaca fascicularis UBE2V1P1
Rhesus Macaca mulatta UBE2V1P1
Baboon Papio anubis UBE2V1P3
Marmoset Callithrix jacchus UBE2V1P11
Pig Sus scrofa UBE2V1P2
Dolphin Tursiops truncatus UBE2V1P1
Horse Equus caballus UBE2V1P1
Greater horseshoe bat Rhinolophus ferrumequinum UBE2V1P5
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104678523P6
AATTTCCAAATGTTGCAAGAACTCAAAGAAGTCTAGAAAGAATGACATGACACAGTGAGCTGGGGCCTGGAGGATGATGAAGACGTGGCAATTATAAGATGGAACGGGATGATAATTGTGCCTCtaagaaaaatttttgaaaactgaataTAGTAAAATAGTATGTGGACTTAAATGTGCAGAAGCACATCCCCctgtaatatttaaaacaaaaattaatatgaatggagttaataa
>XM_010383841.2
GGCCAGGGTACGGGTGGGGGGTGAAGAAGGGGCCGGCCTTCAAGCAACAGCGACGCAAGATGGCAGCCACCACGGGCTCGGgaGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGGCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGATGGACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGtaacaaaaattaatatgaatggAGTAAATAGTTCTAATGGAGTGGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCATTGTCCTGCAAGAGCTTCGGCGCCTAATGATgtctaaagaaaatatgaaactcCCTCAGCCGCCCGAAGGACAGTGTTACAGCaattaatcaaaaagaaaaaccacaggcCCTTCCCCTTACCCCCATTCGATTTAAGCAGT

Publications

PMID - Link Title