Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC115892954P8
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr11:118625364-118627245  UCSC
Strand +
Parental Sequence XM_030915873.1
Parental seq. overlap 1740 bp
Parental seq. overlap (%) 86.4%
Genomic Region Intragenic (MALRD1)
Retrocopy Summary LOC115892954P8, located on chr11:118625364-118627245, is a retrocopy of the parental gene LOC115892954. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC115892954
Full Name N/A
Also known as LOC115892954
Coordinate chr13:123621337-123627098
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBE2V2P1
Gorilla Gorilla gorilla UBE2V1P14
Orangutan Pongo abelii UBE2V1P13
Gibbon Nomascus leucogenys UBE2V1P9
Green monkey Chlorocebus sabaeus UBE2V1P6
Crab-eating macaque Macaca fascicularis UBE2V1P7
Rhesus Macaca mulatta UBE2V1P8
Baboon Papio anubis UBE2V1P15
Marmoset Callithrix jacchus UBE2V1P12
Dolphin Tursiops truncatus UBE2V1P3
Cat Felis catus UBE2V1P4
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC115892954P8
AACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCCTCCTTTGTAAGAGTTGtaacaaaaattaatatgaatggAGTTAATAGCTCTGATGGTATGGTGGATCCAAAAGCCATGTCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGCTTCAGAGCCTAATGATgtctaaagaaaatatgaaactcCCTGAGCCAGCTGAAGGACAGTGTTACAGCaattaatcaaaaagaaaaaccacaggcCCTTCCCATTTCCCCCCTATTCGATTTAAATAGTCTTCATTTTCCACAGTAGTACATTTTCTAGATATGTCTTGTAGAACTCAAAGTACTGGAAAGGAAGCTCCCATTCAAAGGAAATTTATCTGAACATACTGAAATGATACTATTTTTTTTGTCCATTTGGAATATATAAGTTGTGCTATAAAAAATCATCCTGTCAAGTGTCACCACTGTCCATGTAGTTGAACTTCTGGAATCAAGAAAGTCTATTTAAATTGATTCCCATCATAACTGGTGGGGCACATCTAACTTAACTGTGAAAAGACACATCACACAATCACCTTACTGCTAATTATACGGCCTGGGGTCTCTATCTTCTCCCCTTACCCTCCCAACTCCTACCCTCCCTGCAACAATAGCCCTCTAGCCTGGAGGGCTTGTTAGAGTATATGTGAAGGTTTCAGGTTACAGCCTGTGGGACTGCAGCTGGGTGTGTGGGGTGCTTCGCCTGCACCCCTGGTTTCTTTAAGTCTTAAATGATGACATTCCAAGCCATCATCCTGTTCCCATGCTCCTCTACTCCTGCCCTTAGCCAAAGTGTAGGTTGTAACCCCTCTGGTCCCCTCTGAGATTGGCCTTCGGTAAGGAATTCAGGGCTTTCCCCATATCTTCTTTCCCCCACCCTTATTGAGGGGTGatactttttcttccctcctcctcaagTTCCTTTTTGCACTATCACCACCCAACACCTTCCATGATACTTCCTTGCTTTGGCCAGAAGCCATCAGGTAAGGCTGGAAAGAATCTCTGACCTCCCTTGATTAGTTTTGGAACCATACTTATTCACTCTCCACCAGCCTGGGATATGAATATTGGGTCCTCAGCCGTGCCACCCTCTGCTGTCATCAGCTGATGCATTGTTTTTAGCTCAGGTTTTGATAAGGTGAAAAGAATAGTCACCAGGGTTACTCAGACCTGCCAGCTCTCGGAGTCCTTGGTGGTTGAACTTGGAGAAAGGCCACATGAAGACACTTGTAAGCGCACATGATCCCTCTTAATTGTTTTACTTTCCtgtaattgcttttgtttttaaaaattgaagaagtTTTAAACAGGGCTTTTATTTGGTCATTCTTGCAATCCATTGGGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAACCTTGAATCTGGTGCATGCCTTGGTTTTGGTGCTGCTGCTGGTTCTCCAGATCCTCAGCAGGGGTTAAGAAAGAAGCCCGTGTGGACAGCAGATGCCTGAAATTGGCGGACTTGACCTCCTGACAAATTGCTTTGTCTTTCCACTTTCTGTTCAGGATCACTAAATGATGAAATGTGGATGTGTACAGAATTACAAGCAATTCATTGTGtactaaagttttttttgtttgtttgttttgaagcaGCAGCTATCAAGTCTGAAAAGCAACTGATGTTTCCATTAATCTTTTTCTGGGGAAAAACCTTAGTTCTAAGGATTTAACATATTGTAAGTGAAGTTTAACATAACAGTATTCCACAGGTAGTCTTTCTATTGTCAGACCATTGCCTGactttaatataataattaaaaaaaa
>XM_030915873.1
aacaacaaaaaaaaacaaaaacaaaaaaaaaaaacaaaactgtttttccCTGTGCCACCTCACCCACTGAATGCCAGTAATCTCTCAGACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGtaacaaaaattaatatgaatggAGTAAATAGTTCTAATGGAGTGGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGCTTCGGCGCCTAATGATgtctaaagaaaatatgaaactcCCTCAGCCGCCCGAAGGACAGTGTTACAGCaattaatcaaaaagaaaaaccacaggcCCTTCCCCTTACCCCCCATTCGATTTAAGCAGTCTTCATTTTCCACAGTAGTAAATTTTCTAGATACGTCTTGTAGACCTCAAAGTACTGGAAAGGAAGCTCCCATTCAAAGGAAATTTATCTTAAGATACTGTAAATGATACTAATTTTTTGTCCATTTGAAATATATAAGTTGTGCTATAACAAATCATCCTGTCAAGTGTAACCACTGTCCACGTAGTTGAACTTCTGGGATCAAGAAAGTCTATTTAAATTGATTCCCATCATAACTGGTGGGGCACATCTAACTCAACTGTGAAAAGACACATCACACAATCACCTTGCTGCTGATTACACGGCCTGGGGTCTCTGCCTTCTCCCCTTACCCTCCCgcctcccaccctccctgcaACAACAGCCCTCTAGCCTGGGGGGCTTGTTAGAGTAGATGTGAAGGTTTCAGGTCGCAGCCTGTGGGACTACTGCTAGGTGTGTGGGGTGCTTCGCCTGCACCCCTGGTTTCTTTAAGTCTTAAATGATGCCCCTTCCAAGCCATCATCCTATTCCCATGCTCCTCCACTCCCACCCTTGGCCGAAGCATAGATTGTAACCCCTCCGCTCCCCTCTGAGATTGGCCTTCGGTGAGGAATTCAGGGCTTTCCCCATATCTTCTCTCCCCCACCTTTATCGAGGGGTGCtgctttttctccctcctcctcaagTTCCTTTTTGCACCGTCACCACTCAACACCTTCCATGACACTTCCTTGCTTTGGCCAGAAGCCATCAGGTAAGGTTGGAAAGAGTCTCTGACCTCCCTTGTTTAGTTTTGGAACCGTACTCACTCACTGtccaccagcctgggaaatgaaTAATGGGTCCTCAGCCCTGCCACCCTCTGCTGTCATCAGCTGATGCATTGTTTTTAGCTCAGGTTTTGATAAGGTGAAAAGAATAGTCACCAGGGTTACTCAGACCTGCCAGCTCTCGGAGTCCTTGGTGGTTGAACTTGGAGAAAGACCACATGAAGACACTTGTAAGCACACATGATCCCTCTGAATTGCTTTACTTTCCTataattgttttgcttttaaaaattgaagaagtTTTAAACAGGGCTTTCATTTGGTCATCCTTGCAATCCATTGGGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAACCTTGAATCCGGTGCATGCCTTGGTtttggtgctgctgctgcttcccaAGATCCTCAGCAGGGATTAAGAAAGAACCCGGTGTGCACAGCAGATCCCCGAAATTGGTGGGCTTGACCTCCTAGCAGATTGCTGCGTCTTTCCACTTGCTGTTCAGGACCACTAAATGCTGAAATATGGATGCATACCGAAATAAAAGCAATTCATTGTGtactaaaggttttttttttttttttaatttagtatttgTGTAAAACCACCTTTTGAAGCAACAACTATCAAGTCTGAAAAGCAATTGATGTTTCCATTAATCTTTTTCCGGGGGGAAAACCTTAGTTCTAAGGATTTAACATCCTGTAAGTGAAGTTTAACATAACAGTATTCCATAAGCAGCCTTTTTATTGTCAGACCATTGCctgattttaatataataaaaaaaaaagtgtgcgtTAATATTTAA

Publications

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