Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NACAP9
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr11:41105917-41106657  UCSC
Strand -
Parental Sequence XM_010377770.2
Parental seq. overlap 656 bp
Parental seq. overlap (%) 36.2%
Genomic Region Intergenic
Retrocopy Summary NACAP9, located on chr11:41105917-41106657, is a retrocopy of the parental gene NACA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NACA
Full Name N/A
Also known as NACA
Coordinate chr10:54464536-54479352
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NACAP2
Chimpanzee Pan troglodytes NACAP7
Bonobo Pan paniscus NACAP7
Gorilla Gorilla gorilla NACAP7
Orangutan Pongo abelii NACAP7
Gibbon Nomascus leucogenys NACAP1
Green monkey Chlorocebus sabaeus LOC103238540P4
Crab-eating macaque Macaca fascicularis NACAP7
Rhesus Macaca mulatta NACAP7
Baboon Papio anubis LOC101018001P8
Marmoset Callithrix jacchus NACAP8
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NACAP9
TTCCCTGCGCAAAATGCCCAGCAAAGCCACAGAAACCATCCCTGCTACGGAACAGGAGGTGCCGCAGCTCCAGGCTGACAGAGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCCTGAGGAACAGGATTCCACACAGACAACCACACAACAAGCCCAGTTGGCAGCAGCAGCTGAAATTAATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCAGAGTGAAAAGAAAGCACAGAAGGCTATGTCCAAACTGGATCTTCGACAGGTTACAGGGGTTACTAGAGTCACTATCTGGAAATCTAAGAATATCCTCTCTTTGTCATCACAAAACCAGATGTCTATAAGAGCCCTGCTTTGGATACCTACATAGTTTTGGGGGGAACCAAAAATGAAGATTTATCTCAGCGAGCACAGCTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTAAAGCTATCTCAAACATTTAAGAAGAAACACAGACTCCAACTGTACAAGAGGAGAGTTAAGAGGAAGAAGCTGATAAAACAGGTGTGGAAGTTAAGGGCATGGAACTGGTCATGCCCTTGTCAAAGCAAATACATTGAAAGCAAAGGCAGTCCAAGCCCTGAAGAACAATGGTAATGATGTTGTAAATGCTATCATGGAATTAACAAAGTAACCAACTGAAAACAACTTGTTCAGTGTTTCCAAGAAGTAACTGCAGCTTGATTTGAAATTTGTGCTGTTTC
>XM_010377770.2
GCCCAAAATAGCAAGCAAAGGAATTGTATACGTgcctatgttctttttttctggaaaggaGAATCTGCAGCTTTATAATTTCAACATCAGCCTAAACCGTCGTGAACCTAAAACAATCAAAAGGGCCAGAATCTGTTTAAAGAATTTATTCAAGGGCAGTGTGAGGATGGACCAACCAAAAAACCAACTCCAAAGAATGGAGGTCAGCCTTCAGAAGTAGGGAAGttaagatttcatttatttaggcgGACAGAAGTTTTTAGCTGGATTACGTTATCTATACAAGGTTGGAACATAATTACAGAATTTGGTTACAAgcagtgttttgggttttttttttttttttttttctttttttgaggtggggtacAGCTAACATTGTTTTACGGAGAGTTTAACACTCATGAGTTGCTGTCATATGGTGACATCGTTTGAGTCTCTCCAGTCATTgaacagaacaagaaaaataaatcgaATTAAATTTATAATCTGAAGTTATATGTGACCCATCACATCTGTCAAGTTTTAAAACGGGTTctgtttttttggtggggggagcgTCCAGCagcttttaaatgttaattttcacaTCGTGTGTTCCAAAAATAATTGATTAGCCTAGGTCACTTCCACCCTCCAACGCTGTGAATACAGTCTCTGTAGCATTCGCTATTTAATGTCTTATCTTCCCGAGCTATTTGAGAAATCGCTACGTCGCCTTAATACCGCAGTCGCCACTTTGCGGACTGGAGGGCGGAGTCTGCTTCGTTCTGAGGACTGCGTGGCTCCGCGCAGAGAGCTCCTGCTAGGCCTGCGAGTCCTGTTCTGAATTCTTACCCTTATTTAGTCCTTGACACCACCTCCGTCGTGGGAACGGCCTGACGGCCACTCGTCAAAGGAAGTGGCTGCCGGCAGCTCTTGACCCGGAATGGGATCCTAGTCCCACCCCCTCTGCTCCAGGCTTCCTTCTGCAACAGGCGTGGGTTACGCTCTCGCTCGCTCTCTTTCTGCCGCCATCTTGATTCCGCGTTCCCTGCACAAAATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGGCGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGgcTATGTCCAAACTGGGTCTTCGACAGGTTACAGGAGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTCTTTGTCATCACAAAACCAGATGTCTACAAGAGCCCTGCTTCGGATACTTACATAGTTtttggggaagccaagATCGAAGATCTATCCCAGCAAGCACAACTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACACACAGACTCCAACCGTACAAGAGGAGAGTGAAGAGGAAGAGgTCGATGAAACAGGTGTAGAAGTCAAGGACATAGAATTGGTCATGTCACAAGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCGATTATGGAATTAACAATGTAACCATCTGAAAGCAACTTTTTTTGGTGTCTCAAAGGAGTAACTGCAGCTTGGTTTGAAATTTGTACTGTTTCTATCATAATTAAAGTTAATGGCTTCTTGTTGGATGAACTCA

Publications

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