RCPedia: Rtcs

Summary

Retrocopy Name	NUDT9P1	Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species	Rhinopithecus roxellana
Coordinates	chr11:64714825-64715539 UCSC
Strand	+
Parental Sequence	XM_010383126.2
Parental seq. overlap	572 bp
Parental seq. overlap (%)	33.5%
Genomic Region	Intergenic
Retrocopy Summary	NUDT9P1, located on chr11:64714825-64715539, is a retrocopy of the parental gene NUDT9. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	NUDT9
Full Name	N/A
Also known as	NUDT9
Coordinate	chr2:47679121-47715696
Strand	-
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	NUDT9P1
Chimpanzee	Pan troglodytes	NUDT9P1
Bonobo	Pan paniscus	NUDT9P1
Gorilla	Gorilla gorilla	NUDT9P1
Orangutan	Pongo abelii	NUDT9P1
Gibbon	Nomascus leucogenys	NUDT9P1
Green monkey	Chlorocebus sabaeus	NUDT9P1
Crab-eating macaque	Macaca fascicularis	NUDT9P1
Rhesus	Macaca mulatta	NUDT9P1
Baboon	Papio anubis	NUDT9P1
Marmoset	Callithrix jacchus	NUDT9P1
Mouse lemur	Microcebus murinus	NUDT9P1
Pig	Sus scrofa	NUDT9P1
Cow	Bos taurus	NUDT9P1
Sheep	Ovis aries	NUDT9P1
Dolphin	Tursiops truncatus	NUDT9P1
Horse	Equus caballus	NUDT9P1
Dog	Canis familiaris	NUDT9P1
Panda	Ailuropoda melanoleuca	NUDT9P1
Cat	Felis catus	NUDT9P1
Greater horseshoe bat	Rhinolophus ferrumequinum	NUDT9P1
Egyptian rousette	Rousettus aegyptiacus	NUDT9P1
Sloth	Choloepus didactylus	NUDT9P2
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>NUDT9P1
GCTCTGTCTTGGACGGGCCCGTGTGGGCAGATCCTCAAGTGGGTGAAAGCAACTTCTCTCCTAAGTTTAAGGAAAAGGATGGGCGTGTGGAGAGAAGGAGCCAGCATGGCTTGTATGAGATTGAGAAAGGCAGACTTAGAACTCCTGCACGTCAGACAAGACTGGTTGGCCCAGGGCTTTTGGGGTGTTGAGGCCCCAATCATGCTGTAGATCCCATCTTAACCAGATGGAAAAGGGATAGCAAGGGAAACTAAATTACCCACCCTATTTCTGGGAAAAATATCCCGCAATTTGTAGCCATCAAAAGGAAGGACTGTGGAGAATAGGCAATCCCAGGGTGGGTGGTGGATGCAGGAGAGAAAATTAGTGCTACATGGGAGAGAGAATTTGGCTAGGAAGCCACGAAGTCTTTACAGAAATCTAGAGAAGAAATGCAGGAGTTGAAGAGACAATTGCACAAATTCTTCAGCCAGGAACATTTTGTGGTCTATAAAGGCTACGTGGACGATTCTCGGAACACAGATAACTCCTGGATAGAGACAGAGGCTGTGAACTACCATGATGAAACTGGTGAAATAACGGACCATCTTCCTCTGGAAGCTGGCAATGATGCCAAGAAAGTGAAATGGGTGGACATCAATGATAAATTTGAGCTTTATGCCAGCCACTCCCAATTTATTCAACTTGTGTCTGAGAAACAAGGTGCCCACTGGAG

>XM_010383126.2
GCGGCGCGGCCGTAAAGTGCCGTTACGCAGTGAGAAAATTACGACGTCCTTGGTTGCGGTTCCTTCGGTAGCTGGCGCTGTGCGTCACGTGCTGGTCTGGATTTTTCTCGATGCACTGGGTAAAGCCCCGGACTCTTAGCGTGGGAGGGCTCTTGATCTGTGATTTATGGGTAGGCACATCTACTTCAGTTCGGGAACCCAACGGCAGCCGGGTCCTAGTGCCCATTAGATACAGGGGGCCGGGACTCGGAGCTGTGGGTTGTGGGGAGGCGGAGGCACCAACTAAGAGCAACCTAGCATCGCGAAGCCGCCCTCGGGGCGCTGATGGCCGGACCTCTCCTGGGAAGGGCTTTAGCtgcagtgtctctctctgtggccttGGCCTCTGTGACCGTCAGGTCTCCCGGCTGCGGCGGCATCCCTGCGTTCAGaAACTCGTTTTCATCTTGTTGGTTTCATCTTAATACCAACGTCATGTCTGGTTCTAATGGTTCCAAAGAGAATTCCCACAATAAGGCTCGGACGTCTCCTTACCCAGGTTCAAAAGTTGAACGAAGCCAGGTTCCTAATGAGAAGGTGGGCTGGCTTGTTGAGTGGCAGGACTATAACCCTGTGGAATACACTGCAGTCTCTGTCTTGGCTggacccaggtgggcagatcctCAGATCAGTGAAAGTAATTTTTCTCCCAAGTTTAACGAAAAAGATGGGCATGttgagagaaagagcaagaatgGCCTGTATGAGATTGAAAATGGAAGACCAAGaaatCCTGCAGGACGGACTGGACTGGTTGGCCGGGGGCTTTTGGGGCGATGGGGCCCAAATCATGCTGCAGATCCCATTATAACCAGATGGAAAAAGGATAGCAGTGGAAATAAAATCATGCATCCTGTTTCTGGGAAACACATCTTACAGTTTGttgcaataaaaaggaaagactgTGGAGAATGGGCAATCCCAGGGGGGATGGTGGATCCAGGAGAAAAGATTAGTGCCACACTGAAAAGAGAATTTGGTGAGGAAGCTCTCAACTCCTTACAGAAAACCAGTgctgaaaagagagaaatagaggaAAAGTTGCACAAACTCTTCAGCCAAGACCACCTAGTGaTATATAAGGGATATGTTGATGATCCTCGAAACACCGATAATGCATGGATGGAGACAGAAGCTGTGAACTACCATGATGAAACAGGTGAGATAATGGATAATCTTACGCTAGAAGCTGGAGATGATGCTGGAAAAGTGAAATGGGTGGACATCAATGATAAACTGAAGCTTTATGCCAGTCATTTTCAATTCATCAAACTTGTGGCTGAGAAACGAGATGCACACTGGAGCGAGGACTCTGAAGCTGACTGCCATGGGTTATAGCTGATGGTCTCCGTGTAAGCCAAAGGCCCACAGAGGAGCGTATACTGAAAAGAAGGCAGTATCACAGAATTTGTACTATAAAAAGGGTAGGGTAGGCCACTTGGCCTATTTACTTTCAAAACGAGTTGGATTTAGAGTGTTTCACATCAGAATAAAATGAGTAAGATAAACTAGAACACAACATTTTCAGCTTTTTGGTCAAAAGGAATATAAGTAGTCATATTTGGTATGTATTTAAGCATGACTTAAATGAAATGTAAACAACTAATGCTCTTTGAAGAATCATAATCAGAGTAAAGATAAATTCTTGATCAGCTATAA

>XM_010383126.2 

GCGGCGCGGCCGTAAAGTGCCGTTACGCAGTGAGAAAATTACGACGTCCTTGGTTGCGGTTCCTTCGGTAGCTGGCGCTGTGCGTCACGTGCTGGTCTGGATTTTTCTCGATGCACTGGGTAAAGCCCCGGACTCTTAGCGTGGGAGGGCTCTTGATCTGTGATTTATGGGTAGGCACATCTACTTCAGTTCGGGAACCCAACGGCAGCCGGGTCCTAGTGCCCATTAGATACAGGGGGCCGGGACTCGGAGCTGTGGGTTGTGGGGAGGCGGAGGCACCAACTAAGAGCAACCTAGCATCGCGAAGCCGCCCTCGGGGCGCTGATGGCCGGACCTCTCCTGGGAAGGGCTTTAGCtgcagtgtctctctctgtggccttGGCCTCTGTGACCGTCAGGTCTCCCGGCTGCGGCGGCATCCCTGCGTTCAGaAACTCGTTTTCATCTTGTTGGTTTCATCTTAATACCAACGTCATGTCTGGTTCTAATGGTTCCAAAGAGAATTCCCACAATAAGGCTCGGACGTCTCCTTACCCAGGTTCAAAAGTTGAACGAAGCCAGGTTCCTAATGAGAAGGTGGGCTGGCTTGTTGAGTGGCAGGACTATAACCCTGTGGAATACACTGCAGTCTCTGTCTTGGCTggacccaggtgggcagatcctCAGATCAGTGAAAGTAATTTTTCTCCCAAGTTTAACGAAAAAGATGGGCATGttgagagaaagagcaagaatgGCCTGTATGAGATTGAAAATGGAAGACCAAGaaatCCTGCAGGACGGACTGGACTGGTTGGCCGGGGGCTTTTGGGGCGATGGGGCCCAAATCATGCTGCAGATCCCATTATAACCAGATGGAAAAAGGATAGCAGTGGAAATAAAATCATGCATCCTGTTTCTGGGAAACACATCTTACAGTTTGttgcaataaaaaggaaagactgTGGAGAATGGGCAATCCCAGGGGGGATGGTGGATCCAGGAGAAAAGATTAGTGCCACACTGAAAAGAGAATTTGGTGAGGAAGCTCTCAACTCCTTACAGAAAACCAGTgctgaaaagagagaaatagaggaAAAGTTGCACAAACTCTTCAGCCAAGACCACCTAGTGaTATATAAGGGATATGTTGATGATCCTCGAAACACCGATAATGCATGGATGGAGACAGAAGCTGTGAACTACCATGATGAAACAGGTGAGATAATGGATAATCTTACGCTAGAAGCTGGAGATGATGCTGGAAAAGTGAAATGGGTGGACATCAATGATAAACTGAAGCTTTATGCCAGTCATTTTCAATTCATCAAACTTGTGGCTGAGAAACGAGATGCACACTGGAGCGAGGACTCTGAAGCTGACTGCCATGGGTTATAGCTGATGGTCTCCGTGTAAGCCAAAGGCCCACAGAGGAGCGTATACTGAAAAGAAGGCAGTATCACAGAATTTGTACTATAAAAAGGGTAGGGTAGGCCACTTGGCCTATTTACTTTCAAAACGAGTTGGATTTAGAGTGTTTCACATCAGAATAAAATGAGTAAGATAAACTAGAACACAACATTTTCAGCTTTTTGGTCAAAAGGAATATAAGTAGTCATATTTGGTATGTATTTAAGCATGACTTAAATGAAATGTAAACAACTAATGCTCTTTGAAGAATCATAATCAGAGTAAAGATAAATTCTTGATCAGCTATAA

Publications

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