Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name OSTCP3
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Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr4:71112865-71113897  UCSC
Strand -
Parental Sequence XM_010379089.2
Parental seq. overlap 939 bp
Parental seq. overlap (%) 86.5%
Genomic Region Intergenic
Retrocopy Summary OSTCP3, located on chr4:71112865-71113897, is a retrocopy of the parental gene OSTC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name OSTC
Full Name N/A
Also known as OSTC
Coordinate chr2:20992055-21009498
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens OSTCP1
Chimpanzee Pan troglodytes OSTCP4
Bonobo Pan paniscus OSTCP5
Gorilla Gorilla gorilla OSTCP5
Orangutan Pongo abelii OSTCP3
Gibbon Nomascus leucogenys OSTCP1
Green monkey Chlorocebus sabaeus OSTCP5
Crab-eating macaque Macaca fascicularis OSTCP3
Rhesus Macaca mulatta OSTCP3
Baboon Papio anubis OSTCP4
Marmoset Callithrix jacchus OSTCP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>OSTCP3
CCTTGCTGCCACCAGCATGGAGACTTTGTACCGAGTCCCATTCTTAGTGCTCGAATGTCCCAACCTGAAGCTGAAGAAGCCGCCCTGGCTGCATGTGGCATTGGCCATGATTGTGTATGCTCTAGTGGTGGTGTCTTACTTCCTGGTCACTGGAGGAATAATTTATGATGTTATTGTTGAACCTCCAAGTGTTGGCTCTATGAACGATGAACACGGGCATCAGAGCCCAGTAGCTTTCTTGGCCTACAGAGTAAATGAACAATATATTATGCAAGGACTTGCATCCAGCTTCCTGTTTACAATGGGAGGTTTAGGTTTCATATTCCTGGACCGATCAAATGCACCAAATATCCCAAAACTCAGTAGATTTCTTCTTCTATTCGTTGGATTCATTTGTGTCCTATTGAGTTTTTTCATGGCTAGGGTATTCATGAGAATGAAACTGCCAGGCTATCTGATGGGTTAGAGTGCCTTTGAGAAGAACTCAGTGGATACTGGATTTGCTCCTGTCAATGAAGTTTAAAGGCTGTCCAATTCTCTAATATGAGATGtggaaaagaatgaagagcaGCAGTAAAAGAAAGACCTAGTGAAAAAACAGGAAGTGTGTTGAAGCTTGGACTAGAATTCCTTCTTGGTATTAAAGAGACAAGTTtattacagtctttttttttttttttcctgctgaccTATTGCTGTATCAACGATGTTGAGTAGcattttcttcttagtttttagtttcttaaagaaaagatgcTCCATACTTACAACTATAATATCAAATAAAGGGATTATTTTTTACAACCCCCTTAACACTTTTTGGAGATGATATTTCTGATGTtcagaaattaacataaaatcaAGAAGCAAGATTCCATAAGCTGAGAACTCTGGACAGCTGATCAGGTTTACCTATGGTGCTTTAACTTTAACTAGAGTGTGTGATGGTAGGTTATTTCAGATATGTATGTAAGATTGCTTCCTGAACAATAAGATGTATGAAAGgagcagaaataaatactttttctaattt
>XM_010379089.2
GGGCGGGCCTGTTTCCGGGTGGCGCGTGGGGCTTGAGGCCGAGAACGGTCCTTGCTGCCACCAACATGGAGACCTTGTACCGTGTCCCGTTCTTGGTGCTCGAATGTCCCAACCTGAAGCTGAAGAAGCCGCCCTGGTTGCACATGCCGTCGGCCATGACTGTGTATGCTCTGGTGGTGGTGTCTTACTTCCTCATTACCGGAGGAATAATTTATGATGTTATTGTTGAACCTCCAAGTGTTGGCTCTATGACTGATGAACATGGGCATCAGAGGCCAGTAGCTTTCTTGGCCTACAGagtAAATGGACAATATATCATGGAAGGACTTGCATCCAGCTTCCTATTTACAATGGGAGGTTTAGGTTTCATAATCCTGGACCGATCGAATGCACCAAATATCCCAAAACTCAATAGATTTCTTCTTCTGTTCATTGGATTCGTCTGTGTCCTACTGAGTTTTTTCATGGCTCGAGTATTCATGAGAATGAAACTGCCGGGCTATCTGATGGGTTAGAGTGCCTTTGAGAAGAAATCAGTGGATACTGGATTTACTCCTGTCAATGAAGTTTTAAAGGCTGTACCAATCCTCCAGTATGACATGtggaaaagaatgaagagcaGCAGTAAAAGAAATATGTAGTGAAAGGAAGCGTATTGAAGCTTGCACTAGAATTTCTTCTTGGTATTAAAGAGACAAGTTtatcacagtatttttttttcctgctgaccTATTGCTATACCAACAATGTTGAgtggcattttctttttagtttttcatttcttaaagaaaatatattccatatCTACAACTATCATATCAAATAAagtgattgttttttaaaacccCCTTAACATTTTTTGGAGATGACATTTCTGATTTtcagaaattaacataaaatccAGAAGCAAGATTCCATAAGCTGAGAACTGTGGACAGCTGATCAGCTTTTCCTATGGTGCTTTGCCTTTAACTAGAGTGTGTGATGGTAGATTATTTCAGATATGTATGTAAGACTGTTTCCTGAACAGTAAGATTAATGAAAGgagcagaaataaatactttttctaattaa

Publications

PMID - Link Title
No publications available for this retrocopy