Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name PRPF4BP2
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr16:116394497-116397922  UCSC
Strand +
Parental Sequence XM_010366089.2
Parental seq. overlap 3046 bp
Parental seq. overlap (%) 68.3%
Genomic Region Intergenic
Retrocopy Summary PRPF4BP2, located on chr16:116394497-116397922, is a retrocopy of the parental gene PRPF4B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PRPF4B
Full Name N/A
Also known as PRPF4B
Coordinate chr4:16203651-16243842
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PRPF4BP2
Chimpanzee Pan troglodytes PRPF4BP1
Bonobo Pan paniscus PRPF4BP1
Gorilla Gorilla gorilla PRPF4BP1
Orangutan Pongo abelii PRPF4BP1
Gibbon Nomascus leucogenys PRPF4BP1
Green monkey Chlorocebus sabaeus PRPF4BP1
Crab-eating macaque Macaca fascicularis PRPF4BP1
Rhesus Macaca mulatta PRPF4BP1
Baboon Papio anubis PRPF4BP1
Marmoset Callithrix jacchus PRPF4BP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRPF4BP2
ATGTGCGGCagctcttttccttcttccatttcCACTGCCTTTCACGGTCCAGGAAGCCGCCACCACCACAGTGGCGGCAGAGTCAGGAAGTTCAAGATGGCCGCTGCGGAGACCCAGACGCTGCGGGAACAGACGGAGATGGAAGATGCTGATAATTCTGAAAAGAGTATACctgaagaaaatggagaagtATCAGAAGACCAATCTCAAAATAggaacaaaataagtaagaaaagatgttACGGATGCTTCTGATAAAGAGGGTATGTCTCCAGCAAAAAGAACTAAACTTGATGATTTAGCTTTGCTAGAAGACTTGGAAAAACAGAGAGCCTTGATTAAGGCTGAACTTGATAATGAGTTAATGGAAGGAAAGGTCCAATCTGGTATGGGGTTCATTTTACAAGATTATGAGTCTGGCTCTGAAGAAGAGGGGGAGATTCATGAAAGGCAAGAAATGGAAATAGATCTAGTACTAGATCTTCAAGTACAAAGGGGAAACTTGAACTGTGGACaataaaaatactacaaaaaaCGAAGTAAAAGCAGATCCAAAGAACGGCGTAGACGTAGTTCTGATAAGAAGAAAAGTAAGGGGGGTATTGAAATCGTTAAACAGAAAACAACTAGGAGCAAgtcaaaggagaggaaaaaatctAAAAGCCCATCAAAAGAAGTAAGTCTCAAGATCAAGCAAGAGAATTAAAATCCCCTCCCCTTAGAAGGTGATCTTAAGAGAAAATTGGTAAGGCCAGATCTCCTGCTGATGATAAGGTTAAAACTGAAGATAAgagtaaataaaaaaacaagacaaatccCCAATTATAAATGAAAGTAGAAGTCACTATCAAGGTAAAAAATCGAGATCCCCAGTTGATTTAAGAGGTAAATCCAAAGACAGAAGGTCACAgtccagaaagagaaaatcaaaacagTCTGAAGCTGATAAAGAAAAGAACCcaattcaaaaaagatacttcatctgagaaagaaaataggtCACCCAGTAGAAGACCTAGTTGTAGTCCTAAAAGAAGTTTGTCTCCAAAACTACGTGATAAATCAAGAAGTAGGTCTCCACTTTTAAATGATAGAAGATCGAAGCAGAGCAAATCTCCCTCTTGAACACTGTCTCCTGGTAGAACAGCTGAGCCGATCCttagaaggaaaatgaagagaacCAGAGAGAGGACAACTTTCTTCTTCAAGAACACGACTTCGAGATGATATCCTCAATAGACATGAAAGATCAAAAGATGCCAGCCCCATCAATAGGTGGTCTCCAGCTCGAAGAAGAAGTAGATCTCCCATTAAAAGGAGGTCTCATTCCCCACTCAGACATAGCACAAAAAGTCGGGTCTCCAAGAAGAAGATGCAGGTCTCCTTGGAAAAGGGATAGAGGTTGGAGGAGCAGATCATGCTTGAAAATGTGGTCTCAGTCATGGGGTGGTCGTAGATGAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTGTTTCTGAAGAAATGAAAGTTGAGCAGAAATCTTTGATGATAACCTTGAAGATTTTGATGTggaggaagaagatgaagaagccCTAATAGAACAGAGAAGAATCCAAAGGCAGGCAATTGTtcagaaatataaatatcttGCTGAAGATAGCAATATGTCCGTGTCATCTGAACCAAGCATCCCCCAGAGCAGTATGAAAACGTGATCACCTCTCCTTCTGGAGTGAGTAGCTGCTGATGTTAAAGAGTATGAATGGGAAAGTGTTGATACATTTGAGGCCTCAGTGAAAGCCAAGCATAATCTAATGACAGTTGAACAGAATAATGGTTCATCTCAGAAGAAGTCGTTGGTACTTGATATGTTTTACAGAATCTGATGATATGGTTTGCTGACGATTTTGATAGTGCTTGTCTCTGGGCTGCTGGCAATGGATAAGATTCAAAGAGAATCCCAACCTCAGAGATAACTGGACTGGTTCAGAGGGTTATTATCATGTTAACATAGGTGAAGTCCTAGATAAATGTTACAATGCGTATGGCTACACTGGGCAAAGTATATTCAGTAATGTTTTATGAGCCAGAGATAATGCAAGAGCCAGCCAAGAAGTGGCTGTCAAGGTCATCAGAAACAATGAGCTCATGCAAAATACTGGTTTAAAAGAACTAGAGTTCTTGAAAGAATTTGATGCCGATCCTGATGACAAACTTCATTGTCTGCGACTCTTCAGTTGCTTCTATCACAAACAACATCTCTGTCTCATATTCGAGCCTCTCAGTATGAACTTACAAGAGATgttaaaaaatatgataaagatACTGGTTTTCATATTAAAGCTGTAAGATCCCGTAGTCAGCAGTTTTTCCTGGCATTGAAATTCCTTGAAATATGCGATATCCTACATGTAGACAGCAAGCCAGACAATATCCTGGTTAATcatcaaaaactattttaaagtttgtgATCTGGGGTTGGCTTCACATGTTGTGGATAATGACGTTATACCTTATCTTGTCAGTAGATTTTATCGTGCTGTTGAAATCATTATAGGTAAAACCTGTGACTATGGTATACATATGTGGTCAGTAGGTTGCACCTTATACAGACTCTATCtggaaaaattttatttcctggCAAAACTAATAACCATATATTGAAGCTTGTGATGAATCTCAAAGGAAAGATGCCAAATAAGATGATTCAAAAGGTGCATTCAAagatcagcattttgatcaaaatcTCAACTTCATGTACATAGAAGCTGGTAAAGTAACAAGACAGGGAGAAAGTTATTGTTATGAACACCATTAATCCAACTAAGGACCTATTGGCTGACTTGATTGGGTGCCAGACACTTCCTGAAGACTGATGTAAAAAAGTATACCAGCTAAAGGACTTGTTGGACCAGATTCTAATGTTGGGCCTAGCTAAATCAATTAGCATCAACCAGGCCCTACAGCGTGCCTTCATCCAGGACAAAGTTTAAGCAAGATGAAGAAACTCCAAGGGTTTGAGTAAATACAGGGACTGAAGAAATTTCACAGCACTTTATTAATGAATATAAACTTACAAATATTTCTCCAGCAGATTTGAGGAAGCATGATATATTTGAACTTCTTTTAGAAATGTTAGTTAATCTGTTTTTTGTCTTATGTGAAATTTCACCACAGAATTGTTTTAAATTGCCAAGACGGAAGAAAATTACAGTGCTAATGTATATGGTTGGAGTTCACATTAAAGACAAAAGCATCTGTTATAAAACGAGTAGTAATATTGGGTGGTTGATTTGTTTTTAGCAGACTTGGCTTCATTTTGGTCTT
>XM_010366089.2
CCGCTCTTCCTACGCGGTCAGCACATGCGCGGCagctcttttccttcttcttccactTCCACTACCTTCCACCGTCCGGGAGCCGCCGCGACCGCCGCCGAGGAGTCAGGAAGTTCAAGATGGCCGCCGCGGAGACCCAGTCGCTGCGGGAGCAGACAGAGATGGAAGATGCTAATTCTGAAAAGAgtgtaaatgaagaaaatggagaagtATCAGAAGACCAGTCTCAAAATAAGCACAGTCGtcacaaaaaaaagaagcataaacACAGAAGTAAACATAAGAAACATAAACATTCCTCAGAAGAAGATAAGgataaaaaacataaacataagcataaacacaagaaacacaaaagaaaagaggttatCGATGCTTCTGATAAAGAGGGTATGTCTCCAGCAAAAAGAACTAAACTTGATGATTTAGCTTTGCTAGAAGACTTGGAAAAACAGAGAGCCTTGATTAAGGCTGAACTTGATAATGAGTTAATGGAAGGAAAGGTCCAATCTGGTATGGGGCTCATTTTGCAAGGTTATGAGTCTGGCTCTGAAGAAGAGGGGGAGATTCATGAGAAGGCAAGAAATGGAAATAGGTCTAGTACTAGATCTTCAAGTACAAAGGGGAAACTTGAACTTGTGGACaataaaaatactacaaaaaaaCGAAGTAAAAGCAGATCCAAAGAACGGACTAGACATAGGtctgataaaaagaaaagtaaggggGGTATTGAAATCGTTAAAGAGAAAACAACTAGGAGCAAgtcaaaggagaggaaaaaatctAAAAGCCCATCCAAAAGAAGTAAGTCTCAAGATCAAGCAAGGAAATCAAAATCCCCTATCCTTAGAAGGCGATCTCAAGAGAAAATTGGTAAGGCCAGATCTCCTACTGATGATAAGGTTAAAATTGAAGATAAAAGTAAATCAAAAGATAGGAAAAAATCCCCAATTGTAAATGAAAGTAGAAGTCGCGATCGATGTAAAAAATCCAGATCCCCAATTGATTTAAGAGGTAAATCCAAAGACGGAAGGTCACGGTccaaagagagaaaatcaaaacGGTCtgaaactgagaaagaaaagaagccaaTTAAATCTCCCTCTAAAGATGCTTCATCTGGGAAGGAAAATAGGTCACCCAGTAGAAGACCTGGTCGTAGTCCTAAAAGAAGAAGTTTGTCTCCAAAACCACGTGATAAATCAAGAAGAAGCAGGTCTCCACTTTTCAATGATAGAAGATCTAAGCAGAGCAAATCTCCCTCTCGAACACTGTCTCCTGGCAGAAGAGCCAAGAGCCGATCCTTAGAAAGAAAACGAAGAGAACCAGAGAGAAGACGACTTTCTTCTCCAAGAACACGACCTCGAGATGATATCCTCAGTAGACGTGAAAGATCAAAAGATGCCAGCCCCATCAATAGATGGTCTCCAACCCGAAGAAGAAGTAGATCTCCCATTAGAAGGAGGTCTCGTTCCCCGCTCAGACGTAGCAGGTCTCCAAGAAGAAGAAGCAGGTCTCCTCGGAGAAGGGACAGAGGTCGGAGGAGCAGATCACGCTTGAGAAGGCGGTCTCGATCACGGGGTGGTCGTAGACGAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTTTCTGAAGGAATGAAAGTTGAGCAGGAATCTTCATCTGATGATAAcCTTGAAGACTTTGATGTAGAGGAGGAAGACGAAGAAGCCCTGATAGAACAGAGAAGAATACAAAGGCAGGCAATTGTTCAGaaatataaataccTTGCAGAAGATAGCAATATGTCTGTGCCATCTGAACCAAGCAGCCCCCAGAGCAGTACGAGAACACGATCACCATCTCCAGATGACATTCTGGAGCGCGTAGCTGCTGATGTTAAAGAGTATGAACGGGAAAATGTGGATACATTTGAGGCCTCAGTGAAAGCCAAGCATAATCTAATGACAGTTGAACAGAATAATGGTTCATCTCAGAAGAAGTTGTTGGCACCTGATATGTTTACAGAATCTGATGATATGTTTGCTGCGTATTTTGATAGTGCTCGTCTTCGGGCCGCTGGCATCGGAAAAGATTTCAAAGAGAATCCCAACCTCAGAGATAACTGGACCGATGCAGAAGGCTATTATCgTGTGAACATAGGTGAAGTCCTAGATAAGCGTTACAATGTGTATGGCTACACTGGGCAAGGTGTATTCAGTAATGTTGTACGAGCCAGAGATAATGCAAGAGCCAACCAAGAAGTGGCTGTAAAGATCATCAGAAACAATGAGCTCATgcAAAAGACTGGTTTAAAAGAACTAGAGTTCTTGAAAAAACTTAATGATGCTGATCCTGATGACAAATTTCATTGTCTGCGACTCTTCAGGCACTTCTATCACAAACAGCATCTTTGTCTTGTATTCGAGCCTCTCAGtATGAACTTACGAGAGGTGTTAAAAAAATATGGTAAAGATGTTGGTCTTCATATTAAAGCTGTAAGATCCTATAGTCAGCAGTTGTTCCTGGCATTGAAACTCCTTAAAAGATGCAATATCCTACATGCAGATATCAAGCCAGACAATATCCTGGTTAATGaatcaaaaactattttaaagctTTGCGATTTTGGGTCGGCTTCACATGTTGCGGATAATGACATAACACCTTATCTTGTCAGTAGATTTTATCGTGCTCCTGAAATCAttatAGGTAAAAGCTATGACTATGGTATAGATATGTGGTCTGTAGGTTGCACCTTATACGAACTCTATACTGGAAAAATTTTATTCCCTGGCAAAACCAATAACCATATGCTGAAGCTTGCGATGGATCTCAAAGGAAAGATGCCAAATAAGatgaTTCGAAAAGGTGTGTTCAAagatcagcattttgatcaaaatcTCAACTTCATGTACATAGAAGTTGATAAAGTAACAGAGAGGgagaAAGTTACTGTTATGAGCACCATTAATCCAACTAAGGACCTGTTGGCTGACTTGATTGGGTGCCAGAGACTTCCTGAAGACCAACGTAAGAAAGTACACCAGCTAAAGGACTTGTTGGACCAGATTCTGATGTTGGACCCAGCTAAACGAATTAGCATCAACCAGGCCCTACAGCATGCCTTCATCcaggaaaaaatttaaacaagatGAAGAAACTCCAAGGGTTTGAGTAAATACAAAGACTGAAGAAATTTCACAGCAGTTTATTAATGTATATAAACTTATAAATATTTCTCCAGCAAATTTGAGGAAGCATGATATATTTGAATTAACAGCAAGGGTgatatttcttttagaaatgttaGTTAATCTGTTTTGTGTCTTACGTGAAATTTCACTGTAGAACTGTTTTAAATTGCCAAGACTGCACAAAATTACAGTGCTAATGTATATGGTTGCAGTTCACATAAAGACAAAAGCATCTGTTATAAAATGAGTAGTAATATTGGGTGGTTGATTTGTTTTTAGCAGACTTGGCTTCATTTTGGTCTTGAGATAAAATGGCCAGCATAAATGCTGTTTATATTCACGTTTTcctaggtgtgtgtgtgcaggccACAGCAGCATGCCCTTGGTGTAGTCAGTGCCGAAAGGGGTCTGTTCCTTCTTGAGCCTGCCTGCAGGGATGGTCTCCTTTTAAAGCAGGTTGTGTGCAGCATTCAGTACACTGAAGGTAAGCTAAACCATCAACATCTCTGGTGTTTTAAGATGTTATTTTATTGGAACAACTGACAAATGAGGGATGTTAGCTTTGTGGCAGAATTCCCTGCATGTGTGATAActgatcttgttttattttttggcattGCAACTGTGGCATAGTTACAATTTCTGTTTGTTCATCACATTTAAAATTGGAAGAGAACGCGCTTGATGGATAGAGCGCCTTCAGTGTACTGTTTCTTAttaactttacttttttaaaatcaacttgcTATAGactttatatacattttgttaaatatagTTCCTAGTGACATAGAAACAATGCGTAGTTTTCATTTACTAATTACAGATGTTGAGGCCTAATTCTGAAAGTCCTCATATTTAAAGGCTAGATAGACAACGTAATGAAATTTTTAACTATTTGTATGTCATTTTGAAAGTGTACTGCTTTATGGTAaaagtgtttttcatttgttcattgttttcattatttgtgATCATGTTGTCTTTCAATACAGGCATAAACCTTCCACTCTTGAACAAAGCAGCTGCTTTTTAAAAGCGGTAATTGCTtctttaccttttatttcttttgtaaatgaagcttttctttaagaatgtgacTTTAAAGTGTTGTCTATTGCATAAAACAGTTGACACTCACTTATTGTAAAGTGAAGATTGTTCTACTGCATGTGAAGTGGACCATGCAGATTTCTGTATGTTCTCAGTATGCATCACTAGATAATAAAGTCTTTTGTGAACAAGGCA

Publications

PMID - Link Title