RCPedia: Rtcs

Summary

Retrocopy Name	RAC3P1	Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species	Rhinopithecus roxellana
Coordinates	chr15:60605413-60605599 UCSC
Strand	-
Parental Sequence	XM_010354336.2
Parental seq. overlap	146 bp
Parental seq. overlap (%)	10.3%
Genomic Region	Intergenic
Retrocopy Summary	RAC3P1, located on chr15:60605413-60605599, is a retrocopy of the parental gene RAC3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	RAC3
Full Name	N/A
Also known as	RAC3
Coordinate	chr19:39408969-39411570
Strand	-
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Gibbon	Nomascus leucogenys	RAC3P1
Green monkey	Chlorocebus sabaeus	RAC3P1
Crab-eating macaque	Macaca fascicularis	RAC3P1
Baboon	Papio anubis	RAC3P1
Pig	Sus scrofa	RAC3P1
Sheep	Ovis aries	RAC3P1
Dolphin	Tursiops truncatus	RAC3P1
Horse	Equus caballus	RAC3P1
Dog	Canis familiaris	RAC3P1
Panda	Ailuropoda melanoleuca	RAC3P1
Velvety free-tailed bat	Molossus molossus	RAC3P1
Greater mouse-eared bat	Myotis myotis	RAC3P3
Kuhl's pipistrelle	Pipistrellus kuhlii	RAC3P1
Greater horseshoe bat	Rhinolophus ferrumequinum	RAC2P1
Human	Homo sapiens	Without Homology
Chimpanzee	Pan troglodytes	Without Homology
Bonobo	Pan paniscus	Without Homology
Gorilla	Gorilla gorilla	Without Homology
Orangutan	Pongo abelii	Without Homology
Rhesus	Macaca mulatta	Without Homology
Marmoset	Callithrix jacchus	Without Homology
Mouse lemur	Microcebus murinus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Cow	Bos taurus	Without Homology
Cat	Felis catus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>RAC3P1
CTGTGGGACACTGCGGGCCAGGAGGAGTATGACCGCCTCCGTACACTGTCCTACCCTCAGACCAACGTCTTTGTCATCTGTTTCTCCATTGCCAGTCCGCCTTCCTATGAGAACGTGCGACACAAGTGGCATCCAGAGGTGTGCCACCACTGCCCTGATGTGCCCATCCTGCTGGTGGGCACCAAGA

>XM_010354336.2
GTCCTCGCGAGGCGGCCCCGCAGTACCCCGCCCGAGCCGCGTGCGCCCCGGGGCCgaggggggcggggtggggcggggcgggtTCCGCGGGCCTCCAGCTCGGGCCCACCTGATGCTGCCCGGCTCCCGCCCGGGCTGGTTGCCGGTGAGGCGGGGCCGCCGCCCTGTCCTCCTAGTGGGTGGGGCCAGGCCTCTCACCTGGGCTGAACCCTTCGCCGGCCCCACCCTCTCCTGCCGCCACCCTCGAGTCGGGGCCTCTGCCTGGGGCGCCAATGTTGGGCGCCCTGCGCCCCCATTCACCACCCCAGCCCCCGGAGCCCGGCCTGCCCTGGTCGTCCTCCAGCCCTAGGTCGCCGCGGATCTGGTGGGCTGGGACCCCCGTCTCCACCCCAGACACCCTAACTCGCCTCTGGCTGCTGGGGAGGGGTTTGCCCTTGTTGGGCAGAGGGTCCGAGGCCGGGCCTGGGAGCCACGTGGCTTGCCCTGTCCGCAGCGCCGTGGGGAAGACATGCTTGCTGATCAGCTACACGACCAACGCCTTCCCCGGAGAGTACATCCCCACCGTTTTTGACAACTACTCGGCCAACGTGATGGTGGACGGGAAGCCGGTCAACCTGGGGCTGTGGGACACGGCGGGGCAGGAGGACTATGATCGGCTGCGGCCACTTTCCTACCCCCAAACTGACGTCTTTCTGATCTGCTTCTCCCTGGTGAGCCCGGCCTCCTTTGAGAACGTTCGTGCCAAGTGGTACCCGGAGGTGCGGCACCACTGCCCCCACACACCCATCCTCCTGGTGGGCACCAAGCTGGACCTCCGCGACGACAAGGACACCATTGAGCGGCTGCGGGACAAGAAGCTGGCGCCCATCACCTACCCACAGGGCCTGGCCATGGCCCGGGAGATTGGTGGGCTCTGTGAAGTACCTGGAGTGCTCAGCCCTGACCCAGCGGGGCCTGAAGACAGTGTTTGACGAGGCAATCCGCGCAGTGCTCTGCCCGCCCCCAGTGAAGAAGCCAGGGAAGAAGTGCACGGTCTTCTAGAGCCCTGGCACACCTGAGCCTGAGGGCTGGCGGGGAGCAGCCCTAGACGTGTCTGCTGTTGTGTCGAGACGTGTGGTGTCCCTGAGTCGGCTGTGGGGAGCGGTTAGGGTGGGCAGGGGGGAAGCATGGGGATGAGGCTGGGCGGCAGGATCCTGTCCTCTCTGCTGCCTCATTCTGGGGTGTGGCTCCAGCCTTCCCTGGCCCCCGCCGGAGGCCAGGAGGGAGCAGGGTCTCCCTCAGGGCTGCAGGGGCAGGTGCAGGTGCAGGGAAGCCCCAGGATGGGCTTCCCTGGAGGGGGAGGGTGGGGGGGAGTTCTGTCCATTGCGCCCCAAGGCGGGGCGGCCCCTTCTTATTTTATACAATAAACATTCTCCACCTAC

>XM_010354336.2 

GTCCTCGCGAGGCGGCCCCGCAGTACCCCGCCCGAGCCGCGTGCGCCCCGGGGCCgaggggggcggggtggggcggggcgggtTCCGCGGGCCTCCAGCTCGGGCCCACCTGATGCTGCCCGGCTCCCGCCCGGGCTGGTTGCCGGTGAGGCGGGGCCGCCGCCCTGTCCTCCTAGTGGGTGGGGCCAGGCCTCTCACCTGGGCTGAACCCTTCGCCGGCCCCACCCTCTCCTGCCGCCACCCTCGAGTCGGGGCCTCTGCCTGGGGCGCCAATGTTGGGCGCCCTGCGCCCCCATTCACCACCCCAGCCCCCGGAGCCCGGCCTGCCCTGGTCGTCCTCCAGCCCTAGGTCGCCGCGGATCTGGTGGGCTGGGACCCCCGTCTCCACCCCAGACACCCTAACTCGCCTCTGGCTGCTGGGGAGGGGTTTGCCCTTGTTGGGCAGAGGGTCCGAGGCCGGGCCTGGGAGCCACGTGGCTTGCCCTGTCCGCAGCGCCGTGGGGAAGACATGCTTGCTGATCAGCTACACGACCAACGCCTTCCCCGGAGAGTACATCCCCACCGTTTTTGACAACTACTCGGCCAACGTGATGGTGGACGGGAAGCCGGTCAACCTGGGGCTGTGGGACACGGCGGGGCAGGAGGACTATGATCGGCTGCGGCCACTTTCCTACCCCCAAACTGACGTCTTTCTGATCTGCTTCTCCCTGGTGAGCCCGGCCTCCTTTGAGAACGTTCGTGCCAAGTGGTACCCGGAGGTGCGGCACCACTGCCCCCACACACCCATCCTCCTGGTGGGCACCAAGCTGGACCTCCGCGACGACAAGGACACCATTGAGCGGCTGCGGGACAAGAAGCTGGCGCCCATCACCTACCCACAGGGCCTGGCCATGGCCCGGGAGATTGGTGGGCTCTGTGAAGTACCTGGAGTGCTCAGCCCTGACCCAGCGGGGCCTGAAGACAGTGTTTGACGAGGCAATCCGCGCAGTGCTCTGCCCGCCCCCAGTGAAGAAGCCAGGGAAGAAGTGCACGGTCTTCTAGAGCCCTGGCACACCTGAGCCTGAGGGCTGGCGGGGAGCAGCCCTAGACGTGTCTGCTGTTGTGTCGAGACGTGTGGTGTCCCTGAGTCGGCTGTGGGGAGCGGTTAGGGTGGGCAGGGGGGAAGCATGGGGATGAGGCTGGGCGGCAGGATCCTGTCCTCTCTGCTGCCTCATTCTGGGGTGTGGCTCCAGCCTTCCCTGGCCCCCGCCGGAGGCCAGGAGGGAGCAGGGTCTCCCTCAGGGCTGCAGGGGCAGGTGCAGGTGCAGGGAAGCCCCAGGATGGGCTTCCCTGGAGGGGGAGGGTGGGGGGGAGTTCTGTCCATTGCGCCCCAAGGCGGGGCGGCCCCTTCTTATTTTATACAATAAACATTCTCCACCTAC

Publications

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