Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL12P19
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr8:3455476-3456089  UCSC
Strand +
Parental Sequence XM_010367844.2
Parental seq. overlap 562 bp
Parental seq. overlap (%) 85.2%
Genomic Region Intergenic
Retrocopy Summary RPL12P19, located on chr8:3455476-3456089, is a retrocopy of the parental gene RPL12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL12
Full Name N/A
Also known as RPL12
Coordinate chr16:16678365-16682111
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL12P42
Chimpanzee Pan troglodytes RPL12P40
Bonobo Pan paniscus RPL12P37
Gorilla Gorilla gorilla RPL12P21
Orangutan Pongo abelii RPL12P48
Gibbon Nomascus leucogenys RPL12P23
Green monkey Chlorocebus sabaeus RPL12P8
Crab-eating macaque Macaca fascicularis RPL12P45
Rhesus Macaca mulatta RPL12P46
Baboon Papio anubis RPL12P46
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL12P19
gggctttcgGCTTGGAGGAGACCAAGGTGCAACTTTCTTCGGTCATCCAGAATCCAGGTTCTTCTGACACCAGCCACCTCCACCATGCTGCCAAAGTTCAACACCAACGAGATCAAATTTGTATACCTGAGGCACACCAGGGGTGAAGTGAGTGCCACTTCTGCACTGGCCCCCAAGATTAGTCCTCTGGGTCTGTCTCCAAAAATGACATTGCCAAGGCAACGGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTCAGGTGGTGCCTTCTGCCTTTGCCCTGATCATCAGAGCCCTCAAGGAACcaccaagagaaagaaacagaaaaacattaaacACAATGGGAATATCGCTTTTGATGAAATCATCAACATTACGCGACAGATGCGGCACCGATCTTTAGCCAGAGAGTTCTCTGGAACCATCAAAGAGATCCTGCGGACTGCCCAGTCTGTGGGCTGTCATGTTGATGGCCACCACCCTCATGACATCATAGATGACATCAACAGTGGTGCTGTGGAATGCCCAGCCAGTtaagaagcacaaagaaaaatatttcaataaagggTCATTTCACAActgg
>XM_010367844.2
GGCGTCGTCCGTGCGATTTCCGGCCTTTCGGCTTTTGGCTCGGAGGGGGCGAAGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAGCCGCCTCCACCATGCCGCCGAAGTTCGACCCCAATGAGATCAAAGTCGTATACCTGAGGTGCACCGGAGGTGAAGTCGGTGCCACTTCTGCGCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCGAAAAAGGTGGGTGATGACATTGCCAAGGCAACAGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAGGTGGtgccttctgcctctgccctgaTCATCAAAGCCCTCAAGGAACCaccaagagacagaaagaaacagaaaaacaTTAAACACAGTGGGAATATCACTTTTGATGAGATCATCAACATTGCTCGACAGATGCGGCACCGATCCTTAGCCAGAGAACTCTCTGGAACCATTAAAGAGATCCTGGGGACTGCCCAGTCTGTGGGCTGTAATGTTGATGGCCGCCACCCTCATGACATCATAGATGACATCAACAGTGGTGCTGTGGAATGCCCAGCCAGTTAAGCACAAAGGAAAGTATTTCAATAAAGGATCATTTGACAACTGGTGGA

Publications

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