Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL12P37
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr15:108392108-108392647  UCSC
Strand +
Parental Sequence XM_030920238.1
Parental seq. overlap 468 bp
Parental seq. overlap (%) 55.6%
Genomic Region Intragenic (LDLRAD3)
Retrocopy Summary RPL12P37, located on chr15:108392108-108392647, is a retrocopy of the parental gene RPL12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL12
Full Name N/A
Also known as RPL12
Coordinate chr16:16678365-16682111
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL12P31
Chimpanzee Pan troglodytes RPL12P28
Bonobo Pan paniscus RPL12P26
Gorilla Gorilla gorilla RPL12P26
Orangutan Pongo abelii RPL12P30
Green monkey Chlorocebus sabaeus RPL12P2
Crab-eating macaque Macaca fascicularis RPL12P37
Rhesus Macaca mulatta RPL12P38
Baboon Papio anubis RPL12P36
Marmoset Callithrix jacchus RPL12P43
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL12P37
GCTTTTGGCTTTCGGCTCGGAGGAGGCCAAGGTGCAACTTTATTGGGTCGTCCCGAATCCAGGTTCCTCTGACACCAGCCGCCTCCAGCACACCACTGAAGTTCAACCTCAACAAGATCAAAGTCATATACCTGAGGTGCACCTCAGGTAAAGTTGGTGCCATGTCTGGCCCCCAAGATTGGCCCTCTGGGTCTGTCTGCAAAAAAGGTTGGTGATGACACTGCCAAAGCAACCAGTGACTGGAAGGGTCTAAGGATTATAGTGAAACTGACCATTCAGAACAGACCCAGAGTGAGCTGGTACCATCTGCCTCTGCCAGAAGGGTTTCTGCAAAGCCCTCAAGGAACCACAAAGAGacggaaagaaacagaaaaacattaaacACAATGGAAATATCACTTTTGATGAGATTGTCAACATTGCTCCACAGATGTGGCACTGATCTTTGTAGCCAGAGAACTCTCTGAAACCATTAAAGAGATCCTGGGAACTGCCCAGTCTGTGAGTTGCAATGCTGATGGCTGCCACTTCATGACATCA
>XM_030920238.1
GGCGTCGTCCGTGCGATTTCCGGCCTTTCGGCTTTTGGCTCGGAGGGGGCGAAGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAGCCGCCTCCACCATGCCGCCGAAGTTCGACCCCAATGAGATCAAAGTCGTATACCTGAGGTGCACCGGAGGTGAAGTCGGTGCCACTTCTGCGCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCGAAAAAGGTGGGTGATGACATTGCCAAGGCAACAGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAGGTGGtgccttctgcctctgccctgaTCATCAAAGCCCTCAAGGAACCaccaagagacagaaagaaacagaaaaacaTTAAACACAGTGGGAATATCACTTTTGATGAGATCATCAACATTGCTCGACAGATGCGGCACCGATCCTTAGCCAGAGAACTCTCTGGAACCATTAAAGAGATCCTGGGGACTGCCCAGTCTGTGGGCTGTAATGTTGATGGCCGCCACCCTCATGACATCATAGATGACATCAACAGTGGTGCTGTGGAATGCCCAGCCGTAAGTGacttttttgcttcattttccaTTGTTACAATAGGGGCAAAAGGGGGGCCACTCAATGTATTCACAGAGATAAGCTGGGAAGTTTTGGAAATGGTTACTGGTGGGGTTCGGATAATCCTTTTAAACTTTCCCTCTTACTGataaagactttttttcctttcccacagAGTTAAGCACAAAGGAAAGTATTTCAATAAAGGATCATTTGACAACTGGTGGA

Publications

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