Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name S100A11P3
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr3:87829720-87830264  UCSC
Strand -
Parental Sequence XM_005541838.2
Parental seq. overlap 469 bp
Parental seq. overlap (%) 72.9%
Genomic Region Intergenic
Retrocopy Summary S100A11P3, located on chr3:87829720-87830264, is a retrocopy of the parental gene S100A11. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name S100A11
Full Name N/A
Also known as -
Coordinate chr1:99879727-99884281
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens S100A11P2
Chimpanzee Pan troglodytes S100A11P2
Bonobo Pan paniscus S100A11P6
Orangutan Pongo abelii S100A11P2
Gibbon Nomascus leucogenys S100A11P4
Green monkey Chlorocebus sabaeus S100A11P5
Rhesus Macaca mulatta S100A11P3
Baboon Papio anubis S100A11P1
Golden snub-nosed monkey Rhinopithecus roxellana S100A11P9
Gorilla Gorilla gorilla Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>S100A11P3
CTCCCAGTCACAGCCTCCTGCGCATCGCTCAGCTCCAACATGGCAAAAATCTCCAGTCCTACAGAGACTGAGTGGTGCATCAAGTCCCTGATTGCTGTTTTCCAGAAGTATGCTGGAAAGGATGGTTACAACTGCAGTCTCTCCAAGACGGAGTTCCTAAGCTTCATGAATACAGAGTTATTCAGCTTCCTGAATACAGAGCTGGCTGCCTTCACAAAGAACCACAAGGACCCCAGTGTCCTTGACCGCATGAAGAAACTGGATGTCAACAGTGATGGGCAGTTAGACGTCCCAGAATTTCTTAATCTGATTGGTGGCCTAGCTGTGGCTTGCCATGACTCCTTCCTTAAGGCTATCCCTTCCCAGAAGTGGACCTGAGGACCCCTTGGGCCTGGCCTTCAAACCCACCCCCTTTCTTTCCAGCCTTTCTGTCATCATCTCCTCCTCACAGCTCACACGTCCCCTAAGCCCAGCACACCCACCACATCATGCAGGCCCCACCTGTGGATAGTAATAAAACAATGTCACTGTTTTAAAACATGAAA
>XM_005541838.2
tctgagtaaggcctgggcaaggctgggccgggaagggcgtgggtcggggAGAGGTTGCAGACCCGCACGCCGCGCGCACAGAGCTCTCAGCGCCGCTCCCAGCCACAGCCTCCCGCGCCTCGCTCAGCTCCAACATGGCAAAAGTCTCCAGCCCTACAGAAACTGAGCGGTGCATCGAGTCCCTGATTGCTGTTTTCCAGAAGTATGCCGGAAAGGATGGTTATAACTACACTCTCTCCAAGACGGAGTTCCTAAGCTTCATGAATACAGAACTGGCTGCCTTCACAAAGAACCAGAAGGACCCCGGCGTCCTTGACCGCATGATGAAGAGACTGGATACCAACAGTGATGGACAGCTAGATTTCTCAGAATTTCTGAATCTGATTGGTGGCCTAGCTATGGCTTGCCATGACTCCTTCCTCAAGGCTGTCCCTTCCCAGAAGCGGATCTGAGGACCCCCTGGGCCTGGCCTTCAAACGCATCCCCTTCCTTCCAGCCTTTCTGTCATCATCTCCATAGCCCACACATCCCCTGAGCCCAGCATACCAACCACCTCATGCAGGCCCCACCTGCCAATAGTAATAAAACAATGTCACTTTTTTAAAACATGAA

Publications

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