Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL3P13
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr9:19855392-19856647  UCSC
Strand +
Parental Sequence XM_010389277.2
Parental seq. overlap 1043 bp
Parental seq. overlap (%) 72.5%
Genomic Region Intragenic (LOC104679664)
Retrocopy Summary RPL3P13, located on chr9:19855392-19856647, is a retrocopy of the parental gene RPL3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL3
Full Name N/A
Also known as RPL3
Coordinate chr13:1806167-1813086
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL3P10
Chimpanzee Pan troglodytes RPL3P7
Bonobo Pan paniscus RPL3P8
Gorilla Gorilla gorilla RPL3P7
Orangutan Pongo abelii RPL3P7
Gibbon Nomascus leucogenys RPL3P4
Crab-eating macaque Macaca fascicularis RPL3P11
Rhesus Macaca mulatta RPL3P11
Baboon Papio anubis RPL3P10
Marmoset Callithrix jacchus RPL3P14
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL3P13
AATTTGATGGCATGATGTCTTGCAGGAAATCCTTTGCTCCAAGACATGGGTCCCTGGGCTTCCTGCATTGGAAACACAGCAGTAGGCATCATGGTAAGGTGAAGAGCTTCCCCAACAATGATCCTTCTAAATTGGTCCACCTCAAAGCTTTCATGGGATACAAGGCTGGCATGACACATCGTCTGAAAAGCTGGCCAGCTAGGACCCAAGGTGAACAGGAAGGAAGTGGTAGAGGCTGTGATCATTGTAGAGACACTGCCCATAGTGGTTGTAGGCATCCTGGGCTATATGGAAACCCCTCAAGGCCTCTGAATTTCCAAGACCATCTTTGTTGAGCACATTAGCAATGAGTACAAAAGGCGCTTCTATAGGAACTGGCATAAAGCTAAGTAGAAGGCCTTTACCAAGTACTGCAAGAAATGGCAGGGTGAGGATGACAAGAAGCAGCTGGAGAAGGACTTCAACAGCATGAAGAAGTACTGCCAAGTCATCCGCATCAATACCTACACCCAGATGCACCTGCTTCCTTTATGTCAGAAGAAGACCCATGTGATGGAGATCCAGGTGAACAGAGGCACTGTGGCCGAGAAACTGGACTGGTCCCTGGAGAGGCTAGAGGACCAGGTACCTGTGAAACAAATGTTTGGACAGGACAAGATGATTGACATCAAATGGGTGACCAAGGGCAAAGGCTACAAAGAAGTCACCAGTCATTGGCATACCAACAAACTGCCCTACAAGACCCACTGAGGGCTGTGCAAGGTTGCCTATATTGGGGCATGGCATCCTGCCCATATGACCTTCTCTGTGGCATGTACTGGGCAGAAAGGCTACCATCATTGCACTGagttcaacaagaagatctaTAAGATCAGTCAGGGCTACTTCATCAAGGATGGCAAATTGATCAACGCCTCCACTGACTATGACCTGTCTGACAAGAGCATCAACCCTCTGGGTGGCTTTGTCCACTATGGTGAAGTGACCAATGACTTTGTCATGCTGAAGGGCTGTGTGGTGGGAGCTAAGAAGCAAGTGCTCATCCGCCACAAGTCTTGATGCAGACCAAGCAGCGGGCTCTGGAGAAGACTGACGTTAAGTTCATTGAGACTACCTTTAAATTTGGCCATGGCCACTTCCAAACCATGGAAAAGAAGCATTCATGGGACCACTCAATAAAGACCAGATTGCAAAGGAAGAAGGAGCTTAATGCCTGG
>XM_010389277.2
AGTTAGGCGCGGAAGAGCATGCGTAGAAATGGCGCTCGGTACGTGCCCCCCGACCCGACGTCTGCCGCGGGGGCGCGCTCGCACGCCGGAAGGGGCGGAGCCAGATTTGATTTTATATAGTGAGCACCGACGGCAGGTCGACCTCTACCGGCGGGATTTGATGGCGTGATGtcTCACAGAAAGTTCTCCGCTCCCAGACATGGGTCCCTCGGCTTCCTGCCCCGGAAGCGCAGCAGCAGGCATCGCGGGAAGGTTAAGAGCTTCCCTAAGGATGACCCGTCTAAGCCGGTCCACCTCACAGCcttcctgggatacaaggctggcaTGACCCACATCGTGCGGGAAGTCGACAGGCCAGGATCTAAGGTGAACAAGAAGGAGGTGGTGGAGGCTGTAACCATTGTGGAGACGCCACCCATGGTGGTTGTGGGCATTGTGGGCTACGTGGAAACCCCTCGAGGCCTCCGGACCTTCAAGACTGTCTTCGCTGAGCACATCAGTGATGAATGCAAGAGGCGTTTCTATAAGAACTGGCATAAATCTAAGAAGAAGGCCTTTACCAAGTACTGCAAGAAGTGGCAGGATGAGGATGGCAAGAAGCAGCTGGAGAAGGACTTCAGCAGCATGAAGAAGTACTGCCAAGTCATCCGTGTCATTGCCCACACCCAGATGCGCCTGCTTCCTCTGCGCCAGAAGAAGGCCCACCTGATGGAGATCCAGGTGAACGGAGGCACCGTGGCCGAGAAACTGGACTGGGCCCGTGAGAGGCTCGAGCAGCAGGTACCCGTGAACCAAGTGTTTGGGCAGGATGAGATGATCGACGTCATCGGGGTGACCAAGGGCAAAGGCTACAAAGGGGTCACCAGTCGTTGGCACACCAAGAAGCTGCCCCGCAAGACCCACCGAGGCCTGCGCAAGGTGGCCTGCATTGGGGCATGGCATCCTGCTCGTGTGGCCTTCTCTGTGGCACGTGCTGGGCAGAAAGGCTACCATCACCGCACTGAGATCAATAAAAAGATCTATAAGATTGGCCAGGGCTACCTTATCAAGGACGGCAAGCTGATCAAGAACAATGCCTCCACTGACTATGACCTGTCTGACAAGAGCATCAACCCTCTGGGTGGCTTTGTCCATTATGGTGAAGTGACCAATGACTTTGTCATGCTGAAAGGCTGTGTGGTGGGAACCAAGAAGCGGGTGCTCACCCTCCGCAAGTCCTTGCTGGTGCAGACGAAGCGGCGGGCTCTGGAGAAGATTGACCTTAAGTTCATTGACACCACCTCCAAGTTTGGCCATGGCCGCTTCCAGACcatggaagagaagaaagcattCATGGGACCACTCAAGAAAGACCGAATTGCAAAGGAAGAAGGAGCTTAATGCCAGGAGCAGATTTTGCAGCTGGTGGGGGGTctcaataaaagttattttccactGA

Publications

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