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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL31P12
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr4:140886751-140887190  UCSC
Strand +
Parental Sequence XM_010386756.2
Parental seq. overlap 380 bp
Parental seq. overlap (%) 74.4%
Genomic Region Intergenic
Retrocopy Summary RPL31P12, located on chr4:140886751-140887190, is a retrocopy of the parental gene RPL31. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL31
Full Name N/A
Also known as RPL31
Coordinate chr17:107987408-107991978
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL31P74
Chimpanzee Pan troglodytes RPL31P20
Bonobo Pan paniscus RPL31P20
Gorilla Gorilla gorilla RPL31P23
Orangutan Pongo abelii RPL31P20
Gibbon Nomascus leucogenys RPL31P51
Green monkey Chlorocebus sabaeus RPL31P33
Crab-eating macaque Macaca fascicularis RPL31P26
Rhesus Macaca mulatta RPL31P26
Baboon Papio anubis RPL31P30
Marmoset Callithrix jacchus RPL31P25
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL31P12
TCGCTCTTCCTTTCCAACTTAGGCCTGGCAGCATGGCTCCCACAAAAAAGGGTGGTGAGAAGAAGGGCTCTTCTTCCATCAAGAGGTGGTGACTCAAGACTACCCCATCAATGACATTTACAAGCGCATCAGTGGAGTGGGCTTCAAGAAGCATGCCCCTCAGGCACTCCAAGAGAACCAGAAATTTGCCATGAAAGAGATGGATACTCCAGATGTGTCCATTAATGCGAGGCTCAACAAAGCTGTCCGGGCCAAAGAAATAAGTAATGTCCAATACCATGTCTGTGTTGTTGTCCAGAAAACATAATGAGGATGAAGATTCACTAAACAAGCTCTATACGTTGGTCACCTCTGTACCTGTTACCACTTTCAAAAATCTACAGCCAATGTGAATAAGAACCAGCTGCTGATCatcaaatacatcaaataaagttttaaaa
>XM_010386756.2
TGGTGACCCGGAAGTTGTACTTGCAACTGCGGCTTTCTTTCTCCCACAATACCTCGCGCTCTTCCTTTCTAACTTGGACCCGGCAGAATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAAAAGGGCCGTTCTGCCATCAACGAGGTGGTGACCCGAGAATACACCATCAACATTCACAAGCGCATCCATGGAGTGGGCTTCAAGAAGCGTGCCCCTCGGGCACTCAAAGAGATTCGGAAATTTGCCATGAAGGAGATGGGAACTCCAGATGTGCGCATTGATACCAGGCTCAACAAAGCTGTCTGGGCCAAAGGAATAAGgAATGTCCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCACCAAATAAGCTCTACACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAATGTGGATGAGAACTAATTGCTGATCatcaaatacatcaaataaagttataaaattgacT

Publications

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