Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SEPHS1P3
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr12:88852917-88854747  UCSC
Strand +
Parental Sequence XM_005564645.2
Parental seq. overlap 1704 bp
Parental seq. overlap (%) 54.7%
Genomic Region Intergenic
Retrocopy Summary SEPHS1P3, located on chr12:88852917-88854747, is a retrocopy of the parental gene SEPHS1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SEPHS1
Full Name N/A
Also known as -
Coordinate chr9:13786595-13816928
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SEPHS1P6
Chimpanzee Pan troglodytes SEPHS1P2
Bonobo Pan paniscus SEPHS1P2
Gorilla Gorilla gorilla SEPHS1P2
Orangutan Pongo abelii SEPHS1P2
Gibbon Nomascus leucogenys SEPHS1P7
Green monkey Chlorocebus sabaeus SEPHS1P3
Rhesus Macaca mulatta SEPHS1P3
Baboon Papio anubis SEPHS1P3
Golden snub-nosed monkey Rhinopithecus roxellana SEPHS1P5
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SEPHS1P3
TTATTCAAGCGACGCTAAGGGAGCCCGGCTGCGCCCGGTGCATTGTGGGAGAAGCCCGCGGCCTGTTTTCAGGAGGAGGCGGAGGGCGCAAAGCGAGCTGGTGGATCCATAAAGAATTCTGCCAACCCCCAGAGGGAGGGGAGGGGCTGAGCTGTGAGGCGAGCGGGGACCCAAGAACTATGTGTACACGGGAGTCCTTCAACCCAGAAAGTTACGAATTGGACAGGAGCTTCTGGCTAACCAGACTCACTGAAATGAAGGGCACAGGCTGGAAAGTGTCCCAAGATGTCCTACAAAAATTGCTGAAATCTTTACAGGTGAACCATTTCCAAGAAGATAAGCAGTTTCTGGGAGCCGTTATGCCAAGGCTTGACATTAGAATGGACACTTGTGTCATTCCTTTGAGGCACGGTGGGCGTTCCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGAAGACCCTTACATGACGGGCAGGATAGCAAGTGCCAGTGTCCTCAGTGACTTCTATGCAGTGGTGGTCATGGAATGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACTGACAGGGAAGGGGATAAAGTGATGCCTCTGATTAACCAAGGTTTTAAAGATGCAGCTGAAGAAGCAGGAACGTCTGTAACCAGCGGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGAGTCGCTACCACTGTCTGCCAGCCCAGTGAATTTATCATGCCAGACAATGCAGTGCCAGGAGACGTGCTGGTGTTGACAAAACCCCTGGGGACACAGGTGGCAGTGGCTGTGCACCAGTGGCTGGATATTCCTGAGAAATGGAATAAGATTAAACTAGTGTTCACTCAAGAAGATATAGAGCTGGCCTACCAGGAGGCCATGATGAACATGGGGAGGCTCAACAGGACAGCTGCAGGACTCATGCACACGTTCAATGCCCACGCGGCCACTGACATCATGGGCTTTGGGATTTGGGGCCACACGCAGAACCTGGCCAAGCAGCAGAGGAACGAAGTGTCGTTTGTAATTCACAACCTCCCAGTACTTGCCAAGATGGCCGTGGTGAGCAAGGCATGCGGAAACATGTTCGGCCTCATGCATGGGACCTGCCCAGAGACCACAGGCAGCCTTCTGATCTGTTTACCATGTCAGCAAGCAGCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATATGGTGAAGGCCACCAAGCATGGATTATTGGGATTGTAGAGAAGGGCAACTGCACAGCCAGCATCATAGACAAACCCGGGATCATCGAGGTCGCACCACAAGTGGCCCCTCAAAATGTGAATCCCACATCCGGGGCCACCTCTTAATCTAGACAGAAATAGCTGTTTGGTTTTGTTTTTAAATAGATCTATTTCCTTTATCATCACTTCAATTAAAGACTATAAACAACAGAAATCTCATTGTGTCTACATATCAGGTGACCTTATGTCGGTTTGTAAGTGGATACAATTAATAAAATAAAATCCATTGCTTTTTTTCCCTGTTACATTAACTGAAGATGCACCTAATCTTGAGGCAGCTTCTGAGTTGAGAATTATATTGTTATCCAATACTGTTCATTCATTTTGAATCTTTAGACACTTACCTCTTGCTGCATAGGCTCTTTTTAAAATTGCTTTCACATAGCACAGACATTACCAGTAGTCGTGTCAAATAGCAGTTGGTATATAGATCCCATTTGATGTATATTTATCATGTCTGATTTTTTAATTTTTTTAAGCATCTTGAATGGTTTTCTGGAGAGACAGCATTGGTAAGTGGCATATGACGATATCCCAGT
>XM_005564645.2
TATTCAGGCGACGCTTAAGGGAGCCCGGCCGCGCCCGGTGCATTGTGGGAGCAGCCCGCGGCCCGTTTTCGGGAGGAGGCGGAGGGCGCAAAGCGAGCCGGTGGATCCATAAAGAACCCAGCCAACCCGCAGAGGGAGGGGAGGGGCTGAGCTGTGAGGAGAGCGGGGCCCAAGAACCATGTCTACGCGGGAGTCCTTTAACCCGGAAAGTTACGAATTGGACAAAAGCTTCCGGCTAACCAGATTCACTGAACTGAAGGGCACAGGCTGCAAAGTGCCCCAAGATGTCCTGCAAAAATTGCTGGAATCTTTACAAGAGAACCACTTCCAAGAAGATGAGCAGTTTCTGGGAGCCGTTATGCCAAGGCTTGGCATTGGAATGGATACTTGTGTCATTCCTTTGAGGCACGGTGGGCTTTCCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGATGACCCTTACATGATGGGCAGGATAGCATGTGCCAATGTCCTCAGTGACCTCTACGCAATGGGGGTCACGGAATGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACTGACAGGGAAAGGGATAAAGTGATGCCTCTGATTATCCAAGGTTTTAAAGACGCAGCTGAGGAAGCAGGAACGTCTGTAACGGGCGGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGAGTTGCTACCACTGTCTGTCAGCCCAATGAATTTATCATGCCGGACAATGCAGTACCAGGGGATGTGCTGGTGTTGACAAAACCCCTGGGGACACAGGTGGCAGTGGCTGTGCACCAGTGGCTGGATATTCCTGAGAAATGGAATAAGATCAAACTAGTGGTCACCCAAGAAGATGTAGAGCTGGCCTACCAGGAGGCAATGATGAACATGGCGAGGCTCAACAGGACAGCTGCAGGACTCATGCACACATTCAATGCCCACGCGGCCACAGACATCACGGGCTTCGGGATTTTGGGCCATGCGCAGAACCTGGCCAAGCAGCAGAGGAACGAGGTGTCATTTGTAATTCACAACCTCCCGGTGCTGGCCAAGATGGCTGCGGTGAGCAAGGCCTGTGGAAACATGTTCGGCCTCATGCACGGGACCTGCCCAGAGACCTCAGGCGGCCTTCTGATCTGTTTACCACGTGAGCAAGCAGCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATATGGTGAAGGCCACCAAGCATGGATTATTGGGATTGTAGAGAAGGGCAACCGCACAGCCAGAATCATAGACAAACCCCGGATCATCGAGGTCGCACCACAAGTGGCCACTCAAAATGTGAATCCCACACCTGGGGCCACCTCTTAATCTAGACAGAAATAGCTGTTTGGTTTTGATTTTAAATAGATCTATTTCCCTTATCACTTCAATTAAAGACTATAAACAACAAAAATCTCATTGTGTCTACACATCGGGGTGACCTTAGGTCTGTTTGTAAGTGGATACAATTAATAAAATAAAATCCATTGCCTTTTTTTCCTGTTACATTAACTGAAGATGCACCTAATCTTGAGGCAGCTTCTGAGTTGAGAATTATATTGTTATCCAATACTGTTGATTCATTTTGAATCTTTAGACACTTATCTCTTGCCGCATAGGCTCTTTTTAAAGGTGCTTTCACATAGCACAGACATTACCAGTAGTCATGTCAAATAGCAGTTGGTGTCTTCATTTTATGTATATTTATCATATAAGTCTGATTTTTTTTTTAAGCGTCTTGAATGGTTTTCTGGAGAGCCAGCATTGGTAAGTTGCACATGACGGtatcccagtcatatcccagtcatatcccagtcataGGAGGGTTGCATGATTCCTCTGAGTGTTTGATTTGAAAAGCCTAGTCTTGTCTCTCAAGAGCATCTTGGACCCAGAACATTCTCCGGTAGTGCATTCATTTCAACACGGCAAGTGCTTCTTCACTGCATGGAAAACCCTTTGAAGACAAAAAAGAAATCTTATTTCTTTTTTTGTAGCCTTCCTGATATTTACAGTAATATCATTAACTGTTTTATCGATAGCAAAAAAAGAATACTTTTTGCAATGTAATTAGATGTTCTATAGTGCTACAAGGAATTGCCTTCCGAATGGAGGTTCATGTATAATACTCATTTACAATTCAATATATAATTACGCAAATAATTTTTAAATATAATCAATAATAAAGACTGTTCTGTGGATGGTAGTGTTTAATACATTTTCTATTTTGTATAGTGATTTCAGGCCTTTTGTTTTCTTAAAATCAGCAGCTGTTTAGCCTAATTCTTAGCATTATTTTGTCCTTTGCGCCAGTACTTTTTTGTGCACGCTTTTTGTGATCTGTGTTAAAAACCTGCATTGCCAACATTGCAGCTCGAACTTAAACTTGTTATTCAAATAAATATTTAATTTTTTAAATTGCTCTTGTATAATCAGATGCCCCTTTTAGTATTATTTTAGAAGCATTGGGAGGGTTTTGCCTAAAGTACAATTTATCGGGAAAAACTAGATTTTAGTTTTATAAAACTTTTAAGTCTTTCATGGGACCTATATTTTCTTGAATTAAATTTTGTAGTTCTAGAATAAATAGGCAATCTAAAAAGGTGTTATCTGTGTGTCGTAAAGTGGAGGCTTCCTTATATTTTAACCTACTGAGCAATGAGGAGGGATTCCTGTCATTAAGCACAAGGGCACTGGATCCTCAAGTGCCCACCTTCATGAGAGAAAAAGCAGCACATCCTGCATGTTTCTGGTGCTTCCTGCTCACAGGCATCAAAGCCGCACATGTAAACTGACTTTTTGCCAAAGGAAATGACCCCTGGGAAGATCAAGCTCTTGGAAGAGGCTTTAACTCGGACGCGACCTCCGGGAACCAGCGGGCAGGGCAGCCTTTATGCATGTGTAACTGGACCTCCAACCATAAGCATGGTGTGCAGTTCGGAAGAGCCTGCTACGGAACTGAAATTGATGGGACATTTTATAGGAATTGATATACAGATGTTGGTCCTCAAAAGCTGCAAACCAGTGGTCTGCAAAATAAAATGTGTTGGAAACCTCTGAGTAAGATCAA

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