Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS12P23
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr9:66505515-66505847  UCSC
Strand +
Parental Sequence XM_010357886.2
Parental seq. overlap 281 bp
Parental seq. overlap (%) 50.2%
Genomic Region Intergenic
Retrocopy Summary RPS12P23, located on chr9:66505515-66505847, is a retrocopy of the parental gene RPS12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS12
Full Name N/A
Also known as RPS12
Coordinate chr4:123599082-123602086
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS12P15
Chimpanzee Pan troglodytes RPS12P15
Bonobo Pan paniscus RPS12P16
Gorilla Gorilla gorilla RPS12P17
Orangutan Pongo abelii RPS12P14
Gibbon Nomascus leucogenys RPS12P21
Green monkey Chlorocebus sabaeus RPS12P15
Crab-eating macaque Macaca fascicularis RPS12P18
Rhesus Macaca mulatta RPS12P16
Baboon Papio anubis RPS12P18
Marmoset Callithrix jacchus GABARAPL2P3
Panda Ailuropoda melanoleuca RPS12P10
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS12P23
ATTAATACTGCTTTACAAGAGGTGCTGACCACTCTCATCACAATGGCCTAGCACATGTAATTCTGAAAGCTGCCAGTCTTAGACAAGTGCCACGTCCACCTCTGTGTGCTTGCATCCCACCGTGATGGCCTGTGGATGTCAAGTTGGTGGAGGGCCTCCGTGCTGAACACCAAATCCACCTAAATAAGCTGGTGACATCAAGAAACTGAGACTGGGTGGGCCTTGGTGAAATTGACAGAGAGGGAAAGCCCAGTAATGTGGTTGGTTGCAGTTCTGGGGTAGTTAAGGACCACGGCAAAGAATCTAAGGCCAAGAATGTCATCAAGGAGTACT
>XM_010357886.2
ACATGCGCACAGGGGGCCTGAAAAACCCTTAAATACCGTCATGCGGGCTGATGAGGCCTCTTTCCCTGCCGCCGCGGAGTCGCGCGGAGGCGGAGGCTTGGGtgcGTTCAAGATTCGGCTTCACCCGTAACCCACCGCCATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTGCTGAAGACCGCCCTCATCCACGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCATTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCATCCAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAACACCAGATCAACTTAATTAAGGTTGATGACAACAAGAAACTAGGAGAATGGGTAGGCCTCTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTAGTAGTTAAGgactatGGAAAGGAGTCTCAGGCCAAGGATGTTATCGAAGAGTACTTCAAAtgcaagaaatgaataaataaatctttggCTCACA

Publications

PMID - Link Title