Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS3AP40
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr15:39083371-39084158  UCSC
Strand +
Parental Sequence XM_010372517.2
Parental seq. overlap 666 bp
Parental seq. overlap (%) 70.6%
Genomic Region Intragenic (FAT3)
Retrocopy Summary RPS3AP40, located on chr15:39083371-39084158, is a retrocopy of the parental gene RPS3A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS3A
Full Name N/A
Also known as RPS3A
Coordinate chr2:56811295-56816394
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS3AP42
Chimpanzee Pan troglodytes LOC461536P35
Bonobo Pan paniscus LOC100975318P34
Gorilla Gorilla gorilla LOC101144197P30
Orangutan Pongo abelii RPS3AP27
Gibbon Nomascus leucogenys RPS3AP29
Green monkey Chlorocebus sabaeus LOC103236378P1
Crab-eating macaque Macaca fascicularis RPS3AP37
Rhesus Macaca mulatta LOC703455P36
Baboon Papio anubis LOC101003493P34
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS3AP40
TGGCAAAAAGGGAACTGAGAAGAAAGTGGTTGATTCATTTTCTATGATATATTGGTATAATGTAAAAGTACCTGCTATGTTCAATATAAGAAATATTGGAAAGGCACTGGTCACAGGGACTCATGGAACCGATTTTGTATCTGATGGCTTCAAGGGTGGACTGATTGAGGTGAATCATGGTGATGTGCAGAGTGATGAAATTGCATTCAGAAAATTCAAGCCAATTACTAAAGATGTTAAGGGCAAAAACTGCCTGAAAACTTCCATGACATGAATCTTACCTATGACAAAATGTGTTTCATGGTCAAAAAGTGGCAGATCTTTATTGAAGCTCATGTTGCTATTGAAACTATAGATGGTATTTACTTTGTCTGTTCTGTGTCAGTTTTACTAAAAATGTGCAATGGTCAGGTACCAGAGACAGAGAACCTCTTACACTCAGCACCAACAGGTCCACCAAATTTGAAAGAAGTCATGACCTGAGAGGTACAGACAAATCATTTGAAAGAAATGGTCAATAAATGGATTCTAGACAgcatcagaaaagacaaagaaaaggttTGCCGATCCATTTATCCTCTTTACGATGTCTTTGTCAGAAAAGTGAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGTGAAGGCAGAAGTTCTGGAAAAGCTACTGGGAATGAGAAAGGTGCTAAGTTGAATGAGCTGATGGATACGCATCACCAGttcaaaaatctttttaaagttcAGACTTTTAATAGTGGCAGATAAAAAGT
>XM_010372517.2
GGGCAAAGGTCACGTAGACGGCGCGCCCAGCCCAGTACGCCTAAGTTCTCGCGCGACTTCCATTTCCGCCCTTTCGGCTCTCTGATCAGCGCCATGGCGGTTGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATccattttctaagaaagattggTATGATGTGAAAGCACCTGCTATGTTCAATATAAGAAATATTGGAAAGACGCTCGTCACCAGGACCCAAGGAACCAaaattGCATCTGATGGTCTCAAGGGTCGTGTGTTTGAAGTGAGTCTTGCTGATTTGCAGAATGATGAAGTTGCATTTAGAAAATTCAAGCTGATTACTGAAGATGTTCAGGGCAAAAACTGCCTGACTAACTTCCATGGCATGGATCTTACCCGTGACAAAATGTGTTCCATGGTCAAAAAGTGGCAGACAATGATTGAAGCTCATGTTGATGTCAAGACTACCGATGGTTACTTGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGTAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAGGTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAAGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAAATTGATTCCAGACAGCATTGGAAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCTCTCCATGATGTCTTcgttagaaaagtaaaaatgctgaAGAAGCCCAAGTTTGAATtggGAAAGCTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAAAGTTCAGACTTCAATTAGtgtcaaataaaaagttttatttgtgaTG

Publications

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