Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TDGF1P2
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr7:63830160-63830574  UCSC
Strand -
Parental Sequence XM_010374783.2
Parental seq. overlap 354 bp
Parental seq. overlap (%) 51.5%
Genomic Region Intragenic (OTC)
Retrocopy Summary TDGF1P2, located on chr7:63830160-63830574, is a retrocopy of the parental gene TDGF1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TDGF1
Full Name N/A
Also known as TDGF1
Coordinate chr1:200212658-200216344
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TDGF1P1
Chimpanzee Pan troglodytes TDGF1P7
Bonobo Pan paniscus TDGF1P6
Gorilla Gorilla gorilla TDGF1P7
Orangutan Pongo abelii TDGF1P6
Gibbon Nomascus leucogenys TDGF1P6
Green monkey Chlorocebus sabaeus TDGF1P5
Crab-eating macaque Macaca fascicularis TDGF1P4
Rhesus Macaca mulatta TDGF1P5
Baboon Papio anubis TDGF1P5
Marmoset Callithrix jacchus TDGF1P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TDGF1P2
GACAGCACTCAGCCCCAGGAGGAGCCTGCAATTCGTCCTTGTCTCACAGTTTGTGCCATCCATGGGGATAAAGGACAGTAAGGAATGAAGCAGAACCTGCTGTCTAAATGGGGGAACCTGCATGCTGGGGTGCTTTCGTGTCTGCCCTTCCTCCTATGGATGCAACTGTGACATTGTTGTGTGCAGAGAGAGCTGTGAGTCTGTGGACCATGACACCTGGCTGCCCAAGAAGTGTTCTATGTGTAAATGCTGGCGTGGCCAACCCCACGGCTTTCCTGAGGCATTTCTACCTGGTTGTGATGGCCTTGTGATGGATAAGGACCTCATGGCTCCCAGGACTCTGGAATACTACCATCTACATGTACCACTTTTATGCTAGCTGGCATGTGCCGTTCCATACAAAGTTTCTATTAAC
>XM_010374783.2
attttcttcttaaattgcCATTTTCGCTTTAGGAGATGAATGTTTTCCTTTGGCTGTTTTGGCAATGACTCTGAATTAAAGCGATGCTAACGCCTTCTTTCCCGCCTAATTGCTAAAAGCTACGGACTGCAGGAAGATGGCCCGCTTCTCTTACAGTGTGATTTGGATCATGGCCATTTCTAAAGCCTTTGAACTGGGATTAGTTGCTGGGCTGAGCCATGGGGAATTTGCACATCCATCTCGGGGAGACCTGGCCTTCAGAGATGACAGCATTCGGCCCCAGGAGGAGCCTGCGATTCGGCCTCGGTCTTCCCAGCGTGTGTCGCCCATGGGGATACAGAACAGTAAGGAGTTAAACAGAACCTGCTGCCTGAATGGGGGAACCTGCATGCTGGGGTCCTTTTGTGCCTGCCCCCCCTCCTTCTACGGACGAAACTGTGAGCACGATGTGCGCAAAGAGAACTGTGGGTCTGTGCCCCATGACACCTGGCTGCCCAAGAAGTGTTCTCTGTGTAAATGCTGGCACGGCCAGCTCCGCTGCTTTCCTCAGGCATTTCTACCTGGCTGTGATGGCCTTGTGATGGATGAGCACCTTGTGGCTTCCAGGACTCCAGAACTACCACCATCTGCACATACCGCTTTTATGCTAGCTGGCATCTGCCTTTCTATACAAAGTTACTATTAA

Publications

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