Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name VDAC2P2
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr8:53029713-53031029  UCSC
Strand +
Parental Sequence XM_010375534.2
Parental seq. overlap 1116 bp
Parental seq. overlap (%) 62.2%
Genomic Region Intergenic
Retrocopy Summary VDAC2P2, located on chr8:53029713-53031029, is a retrocopy of the parental gene VDAC2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name VDAC2
Full Name N/A
Also known as VDAC2
Coordinate chr11:130460430-130481873
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens VDAC2P3
Chimpanzee Pan troglodytes VDAC2P1
Bonobo Pan paniscus VDAC2P1
Gorilla Gorilla gorilla VDAC2P1
Orangutan Pongo abelii VDAC2P1
Gibbon Nomascus leucogenys VDAC2P2
Green monkey Chlorocebus sabaeus VDAC2P5
Crab-eating macaque Macaca fascicularis VDAC2P1
Rhesus Macaca mulatta VDAC2P1
Baboon Papio anubis VDAC2P1
Marmoset Callithrix jacchus VDAC2P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>VDAC2P2
ACCATGTCGACCTACCGACAGACCTGTACACAGCCAGTGTGTCTTCCTCCATCACATGCTCACCTTGTCAAAGCTCCCAGAGAGGGTTTCGACAAAGGATTTGGTTTTAAGTTGGTGAAACGAGGTAAAAGCAAAGTCACGTGGTGGTGTGGAATTATCAGTCTGGTTCATCTAATACAGACACCGGTAAAGTTACTGGGATCTTGGAGTCCGAATATAAATGGTGCAAGTATGACTTGACTTTCACAGAAAAATGGAACACTGATGACACTCTGGGGACAGAAATCATAATTGAAGACCAAATTTGTCAGGGTTCGAAAATGATATTAGATACTACCTTTTCaccaaacatagaaaaaaaaagtggcaaaatCAAGTCCTCTTACAAGAAGGAGCATGTAAAGCTTGGCTttgatgttaactttgatttTGCTGGACTTGCAATTCATGGTTCAGCTTGCTGGGTACCAGATGAGCTTTGACAACACCAAGTCAAAGCAGAGGAGGAATCACTTTGCAGTGGGCTACAGGACTGGGGACCTCCAGTTGCATACTAATGTCAATGATGGGGCAGAATTTGGAGGATCAGTTTGTCAGAAAGTATGTGAAGATCCTGATGATTTAGTAAACCTTGGTTGGACATTAGGTACCAGCTGTGCTTGTTTTGGCCTTGCAGCTAAATTTCAATTAAAACCCACTGCTTCCATTTCTGCAAAAGTCAACAACTGGTTGACTGGGGCGGGCTACACTCCACCCCGGAGGCTTGGTGTGACCCTGTCTGCTCTGGTAGATGGGAAGAGCATGGATGCTGGAGGCCACACACTTGGCCTTGCCCTGGAGCTGCAGGCTTAATCCAGATGAAAGAAACCTCTGGGAATGGATATCAGAAGATTTGGCCTTGATGTATTTCCATTGTGACTAGCAGGCTTTTTCCCCCTGAGAAGGTGATTAAAATGAAGGATGATCTAAACAAGAGCTGTATTTTAAATCTTTAGACAGTTACTTGTTAGCTGCTTTCTAGTTCAATaggctctctctctctagctACCAATGCTGCAGTCCTGCAGTTATCTGTACATTGTTTAGATGTATTTAACTGTTAAATGTGCTACCCACTAATCATGAAATAGACTTTTATGAAAACTGCACAGTTGTGCTCGCATTTGTTTTTGTGTTCCTTTACACACTGAATATTGTCATTGCATGAGATGAATCAGTGGACATTTTAAGATgaggtttaaattatttttgtcaaaTTCAACCACCATTAGAATTATTTTGGTATCCCAGAACATTACAAATCATGAATAAAACAAG
>XM_010375534.2
GGCGGGCCGCAGCGCGCTGCCTTCGCCGTTCCCCGCCCCCTCGCCTCTGAGGCTGCCCGGATAGCTGCCTGATCCAAGGCCCAGCAGCTTCTGCCTTCCCGATCCCCACCGACGGACGGAGGCAGCTCACCTGCAGGACCGTGGCGCTGTCGGTCCACGTGGCCGCTCCGGAGCAGGCTGGAGTTGGCAGCGGGCTGCGCTGCGGGCACAGGCGCGGCGGACAGCCCCGGGGGCAGCGGCGGGGTCCTGGCTGGGAGAGGACAGGGTTGCGGCGGGCGGAACGGTGTCTCCTTCACTTCGCCCTCCAGCCGCTGCAGCTGCAGCCCGACCGGGAGCGTGACGAGCGGCTTCAGCAGCTAGCGGAGCGGTGGCTGCGGCCCCCCTCAGGAGACCACCAGATTCCTCTCTTCCCACGGCCTCGCCATGGCGACCTACGGACAGACTTGCGCGCGGCCAATGTGTATTCCTCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGATATTTTCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCTTGCAGTGGCGTGGAATTTTCAACATCTGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCTTGGAGACCAAATACAAGTGGTGTGAGTATGGTCTGACTTTCACAGAAAAGTGGAACACTGATAACACTCTGGGAACAGAAATCGCAATTGAAGACCAgatTTGTCAAGGTTTGAAACTGACATTTGATACTACCTTCTCACCAAACACAGGaaagaaaagtgGTAAAATCAAGTCTTCTTACAAGAGGGAGTGTATAAACCTTGGTTGTGATGTTGATTTTGATTTTGCTGGACCTGCAATCCATGGTTCAGCTGTCTTTGGTTATGAGGGCTGGCTTGCTGGGTACCAGATGACCTTTGACAGTGCCAAATCAAAGCTGACAAGGAATAACTTCGCAGTGGGCTACAGGACTGGGGACTTCCAGCTACACACTAATGTGAATGATGGGACGGAATTTGGAGGATCAATTTATCAGAAAGTATGTGAAGATCTTGACACTTCAGTAAACCTTGCTTGGACATCAGGTACCAACTGCACTCGTTTTGGCATTGCAGCTAAATATCAGTTGGATCCCACTGCTTCCATTTCTgcaAAAGTCAACAACTCTAGCTTAATTGGAGTAGGCTACACTCAGACTCTGAGGCCTGGTGTGAAGCTTACACTCTCTGCTCTGGTAGACGGAAAGAGCATTAATGCTGGAGGCCACAAGCTTGGGCTCGCCCTGGAGTTGGAGGCTTAATCCAGCTGAAAGATACCTTTGGGAATGGATATCAGAAGATTTGGCCTTAATATATTTCCATTGTGACCAGCAGcaggctttttttcccccaagaagaTGATCAAAACAAAGGATGATCTCAACAAGAGCTGTATTTTAAGTATTTAGACAGTTCCTTGTTAGCTGGTTTCTAGTTGAATTGGTTATCTAGTTACCAATGCTGCAGTCCTGCAGTCACCtatacattatttaaatgtatttaactgTTAAATGCGCTACCCACCAATAATGAAATAGACCTTTATGAAAACCGTGCAATTGTGtgcatgtttgtttttatgttcctTTAGAAAACATTGACTATTACCATTGAATGAGATGGATCAGTGGATATTGAGATGAGGTTAAAAATTTTGTTAAGTTCAGCCATTATTACTTTTGGTATCCCAGAACATGacaaattatgaataaaacaagTATACATAA

Publications

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