Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SSBP4
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr7:10643255-10643660  UCSC
Strand +
Parental Sequence NM_001284046.1
Parental seq. overlap 330 bp
Parental seq. overlap (%) 20.2%
Genomic Region Intergenic
Retrocopy Summary SSBP4, located on chr7:10643255-10643660, is a retrocopy of the parental gene SSB. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SSB
Full Name N/A
Also known as -
Coordinate chr12:58675008-58689220
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SSBP77
Chimpanzee Pan troglodytes SSBP6
Bonobo Pan paniscus SSBP6
Gorilla Gorilla gorilla SSBP7
Orangutan Pongo abelii SSBP6
Gibbon Nomascus leucogenys SSBP2
Green monkey Chlorocebus sabaeus SSBP6
Rhesus Macaca mulatta SSBP4
Baboon Papio anubis SSBP4
Golden snub-nosed monkey Rhinopithecus roxellana SSBP2
Marmoset Callithrix jacchus SSBP3
Mouse lemur Microcebus murinus SSBP1
Dolphin Tursiops truncatus SSBP1
Horse Equus caballus SSBP1
Velvety free-tailed bat Molossus molossus SSBP2
Sloth Choloepus didactylus SSBP3
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SSBP4
TAGATTAGATGTTTGCTGAAATTTTGGGGTGACTTAGATAATCTGACCTGTAGAAAGCACCCACATATCCTTTTCTCAAATCATGGGGAAATAAAATGGATACACTTTAGTAGTAGAGCAAAAGAGAGGTTAATTCTATTTAAGAAAAAAGCTAAAGAAATACTAAATAAAGCAGAAGCAGCCAGTAATTGTAACCTATGACTAAGAAACAAGGAAGCGATGTGGAAAGTACTAGACGGAAAGGTAGAAAAAGAAACACTGAAAAAAACTCATGTAAAATCACCAAGAATCCCTAAACAAATGAGACTCAAAAGGTCATAGATTTAAAGGAAAAGGAAACGGAAATAAAGCTGCCTAGGCTGGATCTGCTAAAGGAAATATACAACTTCAGGGCAGGAAAATGAAA
>NM_001284046.1
GGAGCGCTTTAGGCCGGCCGGCGGAGCTGGGAAGTGGAGTCGTTGGTGTTCCTGTGTGTGAGCCTGTGGCGCGGCTCTGTGGGCCGGAACCTTAAAGATAGCCACAATGGCTGAAAATGGTGATAATGAAAAGATGGCTGCCCTGGAGGCCAAAATCTGTCATCAAATTGAGTATTATTTTGGCGACTTCAATTTGCCACGGGACAAGTTTCTAAAGGAACAGATAAAACTGGATGAAGGCTGGGTACCTTTGGAGATAATGATAAAATTCAACAGGTTGAACCGTCTAACAACAGACTTTAATGTAATTGTGGAAGCATTGAGCAAATCCAAGGCAGAACTCATGGAAATCAGTGAAGATAAAACTAAAATCAGAAGGTCTCCAAGCAAACCCCTACCTGAAGTGACTGATGAGTATAAAAATGATGTAAAAAACAGATCTGTTTATATTAAAGGCTTCCCAACTGATGCAACTCTTGATGACATAAAAGAATGGTTAGAAGATAAAGGTCAAGTACTAAATATTCAGATGAGAAGAACATTGCATAAAGCATTTAAGGGATCAATTTTTGTTGTGTTTGATAGCATTGAATCTGCTAAGAAGTTTGTAGAGACCCCTGACCAGAAGTACAAAGAAACAGACCTGCTAATACTTTTCAAGGATGATTACTTTGCCAAAAAAAATGAAGAAAGAAAACAAAACAAAGTGGAAGCTAAATTAAGAGCTAAACAAGAGCAAGAAGCAAAACAAAAGTTAGAAGAAGATGCTGAAATGAAATCTCTAGAAGAAAAGATTGGATGCTTGCTGAAATTTTCAGGTGATTTAGATGATCAGACCTGTAGAGAAGATTTACACATACTTTTCTCAAATCATGGTGAAATAAAATGGATAGACTTCGTCAGAGGAGCAAAAGAGGGGATAATTCTATTTAAAGAAAAAGCCAAGGAAGCTTTGGGTAAAGCCAAAGATGCAAATAATGGTAACCTACAATTAAGGAACAAAGAAGTGACTTGGGAAGTACTAGAAGGAGAGGTGGAAAAAGAAGCACTGAAAAAAATAATAGAAGACCAACAAGAATCCCTAAACAAATGGAAGTCAAAAGGTCGTAGATTTAAAGGAAAAGGAAAGGGTAATAAAGCTGCCCAGCCTGGGTCTGGTAAAGGAAAAGTACAGTTTCAGGGCAAGAAAACGAAATTTGCTAGTGATGATGAACATGATGAAAATGGTGCAACTGGACCTGTgaaaagagcaagagaagaaacagacaaagaagaacctgcatccaaacaacagaaaacagaaaaTGGTGCTGGAGACCAGTAGTTTAGTAAACCAATTTTTTTATTCATTTTAAATAGGTTTTAAACTACTTTTGTTTGCGGGGGCTTTTAAAAGGAAAACCGAATTAGGTCCACTTCAATGTCCACCTGTGAGAAAGGAAAAATTTTTTGTTGTTTAACTTGTCTTTTTGTTATGCAAATGAGATTTCTTTGAATGTATAGTTCTGTTTGTGTTATTTCAGATGATTCAAATATCAAAAGGAAGATTCTTCCATTAAATTGCCTTTGTAATATGAGAATGTATTAGTACAAACTAATAAAATATATGCTATATGAAAAGAGCAAAAA

Publications

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