Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name ARL5AP11
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chrX:89391968-89393563  UCSC
Strand +
Parental Sequence XM_002749451.4
Parental seq. overlap 1440 bp
Parental seq. overlap (%) 20.2%
Genomic Region Intergenic
Retrocopy Summary ARL5AP11, located on chrX:89391968-89393563, is a retrocopy of the parental gene ARL5A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARL5A
Full Name N/A
Also known as -
Coordinate chr6:76289687-76320574
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus ARL5AP6
Crab-eating macaque Macaca fascicularis ARL5AP6
Rhesus Macaca mulatta ARL5AP6
Baboon Papio anubis ARL5AP4
Golden snub-nosed monkey Rhinopithecus roxellana ARL5AP2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARL5AP11
agaggagctgGGGGAGGAAGGTGGCCCGTGAGGCTCCTCACAGAGAACACTGGGTCGATGTCTGCGAGCCAGGCGAGTGCCCCGGCGGCAACGGTAGGGCCTCGCCCATGGCAGGGCAGCCTGGGCTTCGGCCTCCCTTGGGTTCCCTGGAAGCAGGCCCATGGTCGGCTCAGGAGAAGCAGCAGAGGTGGAGGTTCCACGCGTCTCTCTCCTCCCTGTTAGCCTGAGCCGGGGGAGGCCAAGTGGCCCAGGTGTCTGGAGGTGGGTCTGCTGCCCAGGAATGGGAATTCTCTTAACCAGAGTATGGAGACTGTTCAATCACCAGGAGCACAAAGTTATTGTTGGGCTGGATAATGCAGGAATAACTACCATCCTTTACCAGTTTTTATAATAGTTGTTGTGGACAGTATACAGAGAGAGGATTTCTGTAACTAGAGAAGAACTTTATGAAATGTTAGCACATGAGGACCTAAGAAAGCTGGATTGCTGATTTTTGCTGAtaaaaaagatgttaaataatGCACGACTGTAGCAGAAATCTCCCAGTTTTTTAAGCTGACTTCTACTACAGATCACCAGTGGCATATCCAGGCATGCTGTGCTCTATCTAACTGGTTAGGGATTGTGCCTAGGACTTGAGTAGATGGTGTCATGACTTAAGATTAAATGATCTCTACTGACCTTTTCTCATAGACTTTGTATAAATTAAGTGCTGGACGTTAgctgaaaactgcaaaaattaatggtttagatatatttataataaactgaTTTAGACTTTTTctctatgaagaaaaattaaaccaCTTATTTGGAAACAAATATGACGTCTCCCCTTCCAGTTTACTTTCTCATTAGTTTTTTTCCCAAGCAAGTTATTAAAGCTGTGATTGACATTTTTCTCATAATAAACCCTCTCAGGACATTGTGTAGCCTGTGGTAAATACAAAGAGAGAGGAAGACATTTcgaattttaaaagctttattatCAGTATCACCCTCCCTGGTTgaatgttgttttcttcttgttccattaagtcaaaatacaaattagcacagatattcagttttccaatattttaaaatgtaatgttacTTATGAAAACTATTTTGCTTAAGGTTGTGTGTGTATTGTATATATATCTCAAGTACAACTTACTGGCAttctaaagaaaaacaagtaacacaaatattaataatatcctTAGTTATAACCATAATGAGATAAATATTAGCCTTGGTGTCAAGTACCATCTTATACTTTCTCTCTATGTTCTCTGTATTGTACTAACCAACCTCCCACATCATTGAGttgcttgttaaaaaaaaaaaggaaaaggaaaaagcatgACATTTTGTATCGATGTTTTGTTATTTATCAAAATTACACACATGGAAACATGTAATTCAACAGAGTGGGATAGCTATCAGATTCTTGGCTTAGTATTACTAATGGGCAGGATTGTACAATAAGCATCTATCAGATTATTCCTTTCAATGGTTCTTATGGCCTCTgaattattgaataaatttttaatccattaatCAGTGAATCATAAATTATGATTAAAATCATCAAATAAATTCTCAGCA
>XM_002749451.4
CGCCCCCTCGCCTCCCCCGCCCGCGTGGTCGTCGCCACCGCTGCCGCCCGAGAGGAGCTGGGGGAGGACGGTGGCCCGCGAGGCTCGTCGCAGACAACGCGGCGGCGATGTCCGCGAGTCAGGCGAGTGCCGCGGCGGCAGCGGCGGGGCCTCGCGCGCGGCAGGGCGGCCTGGGCTTCGGCCTCCCTCCGGTTCCCTGGAAGCGGGCCCGCGGCCAGCGCGGGAGCAGCAGCAGAGGCGGAGGCTCCAGCGCGTCTCTCTCCTCCCGCTCAGCCTGAGCCAGGGGAGGCCAGGCGGCCCAGGTGTCTGGAGGGGGTCCGCTGCCCGAGAATGGGAATTCTCTTCACCAGAATATGGAGACTGTTCAATCACCAGGAGCACAAAGTTATCATTGTTGGGCTGGATAATGCAGGAAAAACTACCATCCTTTACCAGTTTTCTATGAATGAAGTTGTACACACATCTCCTACAATAGGAAGTAACGTAGAAGAGATAGTGATTAATAATACACGTTTCCTAATGTGGGATATTGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTATTATACTAACACAGAGTTTGTAATAGTTGTTGTGGACAGTACAGACAGAGAGAGGATTTCTGTAACTAGAGAAGAACTCTATAAAATGTTAGCACATGAGGACCTAAGAAAAGCTGGATTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGACTGTAGCGGAAATCTCCCAGTTTTTGAAGCTAACTTCTATTAAAGATCACCAGTGGCATATCCAGGCATGCTGTGCTCTAACTGGCGAGGGattGTGCCAAGGACTTGAATGGATGATGTCACGACTTAAGATTAGATGATTTCTACTGACCTCTTCTCATAGACTTTGTATAAATGAAGTGCTGGACTTTACCTGAAAGCTGCAAAAATTAATggtttagatatatttataataaactgatttaaactttttctataagaggaaaaattaagaccacttatttgaaaacaaagatgaagTCTCACCTTCCAATTTGCTTTCTCATTAGTTTTTTCCAAAGTAAGTTTTAAAGCTGTGATTGACATTTTTCTCATAATGAATCCTCTCAGGACATTGTGTAGCCTGTGGTAAGTACAAAGGGAGAGGaagacattttgaattttaagagCTTTATTATCAGTATAACCCTCCCTCGTTgaatgttgttttcttcttgttccaTTAAGTCAAAATACAAATCACAGATACTCagtttccaatattttaaaatgtaacgttacttataaaaagtattttgctTAAGgttgtgtgtgtattgtgtataTACCTCAAGTTCAAGTTAATGGCTTTGATTTATGTtctaaagaaacacaaataacacaaatattaataatatcctTATAACCATAATGAGATAAATATTGGCCTTGGTGTTAAGTGCCATTTTATACTTTCTCCCTGTGTTCTCTGTATTGTACTAATCAACCTCCCAAATCAATGAGctgcttgttaaaaaaaaaaaaaggagaaggaaaaagcatGACATTGTGTATTGATTTTTTGTTGACTAAAATCACACACGTGGAAACATGTAATTCAGCAGAGTGGGATAGCTATCAGATTCTTGGCTTAGTATTACTAATGGGCAGGATTGTACCATGAGCAACTATCAGATTATTCCTTTCAGTGGTTCTTATGGCATCTAAATTACtgaataaattattcattaatcAGTGAATCATAAATTATGATTAAAATGATCAAATGAATTCTCAGCATTAATTGAAAACTGTTGTGTGAAACATGTCTACCTGGGAAAGTAACACACTATAAATACTGTTAAACAATTtagctatattattttaaaatattgtatgtcTAGCGGTTAAAATGAATTTCAGAGTAAAAGTTAGGTGTGTTTCTGAGCAACGTTGATAATTTCTTATTTTGGTACTTGAAATATAGTgtgagatttttttatttctaaattttcttgtaTCTTCTATTACATAAATGCATTGTTTGACAGTTATAAAATGCAAGTGTTTTTTGAATGATCTTAAGAATTTGGCTTAAAAGTTTATTGATACACAATGTATTATTTGTACTACGAAGTAACTCGACCCAAAACACTCTTTATGTTAGCTAAGGGTATCTTTTTCAGTGTCTGAAAGTCAAAGGTATTCCTCTCACAACTGTAAACAAACTTGTCCTAAATGTGTTAAAACATATTCTTGGATactccatttgtatatctttcatGCCTTGAAAATCTGAAGGTTAATCCAAACCCAAATGTTTTagcatatttaagaaaaaaactgctTTTAATATCACCCTTTTAAACTTTATGAAGATTTTGGTGAGGAATAATAGCATATACTTTAAGTGTTGACAAAACTTAGAAAGtttctttctataaaatgggaaatacTCAGTATCTAAATCCAGGTCAGGCATGGGAGATCAGTATTTAACATTggatgttttgtgttttatatttataatgttcaAAATGCAAGCATAATTTAATCTTTGTCCACCTGGTTTTACAAAAGTAAATCTTAAATTACCAAGCTTTTCTCATGTTCACATACTTTCTCAAATCTCTATAAAGGattatttatctattaaaaatCCTCTTAACCCAAATCTGTATTATGGTTTCACCAGATAAATATTCTGTGATGTACCCCAGAAAATCCAcatcttttatcctttttattttttaatctgaataATCATGTGCTTAATCCCTTGGATTGCTGCCACATCGGTTTATGTGATATCAGCACATTCCCTTGTCATCAAGGTATTGGCTCAAATTTTTTCATAATTGGCTGTTAAAGCATGCACTACCTGTTACAGTTGGTTCAGTGTAGTGGATTATTGACATGATGTCATGAGAAGATGTGAAATTTTTACTACATTTAtaaaacatgattttgttctcTACAAGGTGAACATTAAAAATGAGGTGGGATCTGTGTACTTGTACATAAAACCAAAATTATAgttgggaaaaataaatttatatatgaaaatgtcaaaatcaattttaacagtattattttcaaataagatagAAAGGCTGGTGAAAAGTCATATTGGCAATTTGTATGTAGTTTAAGTGGAATTAAGCAAAGAGAGATGCTTTTGGGTTTTTAATATGCCACTTTTGAGTGACAACATCTCGTAGAGTCATTGTGTTCAGCTCTGAGAAGAACAAAGATGCTTCTGTACATGTGGCTGGATTTAAATATCCTGTTTTTGATACTAATTTTGAAGTCATGTAACTTCTTTTGCTATCTTGGCAAAAGTAACCGTATGCTATAAGCATTtgaatatgtttaattttgtcataATAGCATCTGTAAAGTATATCTTACACATTATATAGAGGGTTCTTATTTGAAATTTCTAGTTCTCTGTATCTTCCCAGTACATCTTGGTCCTCATAATAAGCAAAGGATATAATGAAGGCAGGTGGTTTAGGGGTTATAGTGGGGAAGTGGATAGGGGATTCATTTTCTTATATGACATTTTGCCTTAAGAATATAAAAGTGCTTTAGCCCTGCTGGCTGGCATTTTTAATATAGGTAATGAAATTGATGTTAGAAGCATGGGATGAAATAGAGGGAAGAAGAGGTTTTATTTTCTGGCTTTTAGGAAGTGCCTAGAAGGTCATTACAGTAAGAATTGCACAGAACTTGAGGAAAGGCATGAAGTCCctgacattttttcctttttgtctcagTGTATAGTTTTAAGCTGCCTAGAAACAGGACTCTATTGTCTCCTCTTGTATAGGCACTTTACATTTCTTGTTGTCACTATGGCAACCACATGCAGTACAGGCAATTTCAAAACCTGTTTATATTAGTGTAAATAGAAAAACTAAACTTTCTAGTTTTCTCTGCAGGCGTTTTTGGGAATGTATGTGTAGTGTGCTCTGCTTTGTATATAGGAGATAGTACCACATCATCAGTTATCTCAGAACTTCAGGGTCATCTCTTAACTGCTCAGTTGTATCTTGACATCAATCCCTTTTTCAAGGCTGGGTAGAGACAACTTTCCCCATGTAACTTTGGCCCCTCCCACTCTTCAAGTGTAATCTGGATCTTCTTGCTTTCAAGATCAGCTTCCCCATATCTCAGGTATCCCTTGCTCTTCTGTATCTTCATTTACTATCAGTGAAGATATCTCTGTCCTGAAGGTTATTCTAAACTTTGTCTATAACTGTTGTTGCCCAAATCAGTAATTTCTATGTAGCTTCTCCAGTTCCTTGCTATCTTCTCACCACTGGATTGAGGTAGTGATTTGGACTTTGCTCATTAGAGAGCATTATCAGAGAGGCAGAGTCCCTCAGAAGACCAGCTTGCGGTGCATATAGCATATAGATGCCAATATTAGAATTCTTTAAATTATAttgtatttaacattttcatgctttttaatttaacttCGCATGTTGGGAAGTAGATTCAGAAAGATAGGAGAAATACCCAGACTCTGCCAGTTCCTTGAGCTCCTAGTTAGGCATTAACAGGATTAAGTTTTATTTGTATTGTCTTCCTATTACCAAGAATGGTTATGTTGCACAGAATACCAGTTCAGTTTGAGTTGGAAAAAGATGCCAAACCAAATTTGTATGTAGCATATAACCTAAGAGCATCCTTGAAATTATTGCCCACATTCcattgttttcttcatgtttgcTTATAAAACAAAGGTAAACATTAGCTGTCTAAAGGAATTAGCAATCAAAAGCCTAACTCAACAAAATAAACCTGTTGAATAAACCTGTTTAAAAGACATCAAAATAATTGTCATGCATTGACTGTAGATGCAGATAAATATGTCTTTAAAGCTCcacttatacaaaaataaaatttctatatcATGCTTCCTCAAAGAATGTATGATAGATTAAGAccatgataataaaataaaaaggaaagaaaaccagaaattagaatttcagatgcTATAAAATAACTTTCTGGTTAACCCTAAAGTCCTGTCAAATTGTGAAGAAATGTAACCGGATGCACTTAGATTCATTTTGCAATATTTCTTATCAATTGTCTAGCCCTTGTGTATTGTTCTAAAAACTAAATCTTTATGCTATTGCCTGCTAGATATCCTGTTCTTTGGTAGAAAATTCCCATAGCGTATACTCAAGAAGTGCCTAAAAATGGATTTGTGTTGATTTTAAGCCCATCTAATAAATTATGTGTATTTTCTATGGTATTACATGTGCTTGTCTTAACTGATAACACAGCCTAGATAACACAGGGTTTCTGTCACAATTTGTactttatttgaataaaaatctTGAAATTGAAGATATCCATCTCACCCTCAACAAACCATAATGTAATGAAGCACGAGCCACACAATTTTGTCTCTTTCCAAATACAAGTATGTCCTGTCCCTGGCATTAGTTAATGCAGTGACTAGAAAACTGAACCCTGCTACTGttttataaaacagttttaacagaaaattaaactGTATGTTTGAAATCGTAAGTAAAAGTTGTTTGCTTACATAAGAGTAGCCTCTTGATTCTCATAGTTAAGTGATTAGTAATTTTGTGTCATACCATTTAGATGTTGAGCCTTTTCatttgtgcatatgtgtatgtgtatgtgtccgAATTCCTCCTCTTTGTTTAGATTCTACTTACAAATCAAACTATTTAATAGAATCTTaatacatttatcatttattcttccagggtttgtttgtttgtttgtttgtttcttaactAACTATAGAGTATGACTAAATTCTGGGGCAAAGCTTGATTGTATTTTCAGTGATGTATAGTTACATTGTTTCATATTAGAAATCGTGCATGGAAAGTGAAATGTGCAtatgattttaaattattgtaatatGTACTGTGCCCTTCCCCTAAATATCTTACATTGATGATATACAGAATTCCTCTATTTTTGCTTGAAAATAGTCCTTTAGATTGGAGTATCCTTTTCTTACATCGCTCTATTGTTCCATGGTATAAAGTGATACCTGCAAAGcacttttaaagatatttttacgTTAATTTCCAAGATACAGCATTGAGGAGGCAGCTATGTCTAATGAGGGCTCTCTTGGTTGCTAGAGATGAGAGAAATATATActaatcattttaatttgtacttaaaatgcattttactaATCATAGTAATTTTAAATATGACAATTTCTTCTTGTAGATATTAATCTTTAATCTTTCCTGTTTATCATATCATTCTAGAGAAGCCTAGATGAAAATGGGTTCCACCTAGTCTCTTTGTAAAACACCTTCCCCACACACTCCCCATCCCTTCCAGTTGAGCTCTATGCACTTTGACAAGCAAATAAGAAGACCTTAGGTTTCTTGTATTTGAATTTCCAAAACAATAAAAGGTTTTTACTCAAGATTTGCATGCAAGAGGCAGAAATTTTGTCTCATCTCTTCATCATTTTGTGAACTTGTGTTTCTCTGTATGCTAGGGAAATTTTGCACACAAGGAATGTTTGAAAAAGTGAGAAGTTTAGAGTGCTTGGGTGCTTTTTATTTGCTCAGTGCTTATGTGTTAGGTATCTAGGGAAATAATGCTTCAGGACCTTTACAGCAACACAGCTTCATCAATGACTGGGGGATATTTATGTTTGTGCTGAGGAAAGGGAGGAGTGGGCAGGTTGGAGTGGGGGCCTTTTCATGGAAAGCAGTGTAGTCAGTTGCTTTATAGATGTGGTTTTTCATTATACTTGTAACAACGTTCTTGTGTCCATAATTGAAGTGTCAAGTTTCAGGAATGCAGGGCATTTATCAGGTGACCAGAAGTAGAACCTTGTTGATTATGAAATGGAAGAATAATGTCAAGGTAGTTGGGAATGACAAATAAGATTTTACCGGTGAATTTCCAtgtttaatatgtatattaatatttttttaagttgcatGTTAATCTGGTATAACGTATTATCTCTGCTTTATGCTttgggtaaaaagaaaaaaaagacaagttacAATTGTTACTCTATTATGTACTATTACATATACCTTTTCTTTTAGAAAGGGTTAATTATAATTACTATTCACA

Publications

PMID - Link Title