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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ATP5MDP1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr5:122956156-122956448  UCSC
Strand +
Parental Sequence XM_017979283.2
Parental seq. overlap 249 bp
Parental seq. overlap (%) 55.7%
Genomic Region Intragenic (RGS9)
Retrocopy Summary ATP5MDP1, located on chr5:122956156-122956448, is a retrocopy of the parental gene ATP5MK. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATP5MK
Full Name N/A
Also known as ATP5MD|USMG5
Coordinate chr12:93750371-93758115
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ATP5MKP2
Chimpanzee Pan troglodytes ATP5MDP1
Bonobo Pan paniscus ATP5MDP1
Gorilla Gorilla gorilla ATP5MDP1
Orangutan Pongo abelii ATP5MDP2
Gibbon Nomascus leucogenys ATP5MDP2
Green monkey Chlorocebus sabaeus USMG5P3
Crab-eating macaque Macaca fascicularis USMG5P2
Rhesus Macaca mulatta ATP5MDP2
Baboon Papio anubis ATP5MDP3
Golden snub-nosed monkey Rhinopithecus roxellana ATP5MDP6
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATP5MDP1
GTGTGGCTTTGGCTAGATTGAAATCATGGCAGGTCCAGAAACGGATGCCCAATTCCAGgcattaaaatacatttcagcTCTTAGAGGCTCACAAGTAGAATGAGTTGTGTACTGACCACATATGGAGGCATTGCTTTGATGATCTTTCACTTCAAGTCAAGATCTAAAAACACTCCAGCTGTGAAAGCAACATAATGGATTCTAAACTGTCTGTGCCTCATCCATTAAGTTCTCATGCCTGGAGAAGTTCATGTCGACTTGTTATGTGATAATTCAATTTGTACAATAAAtta
>XM_017979283.2
AAGGGCGGGACTTCGAGCCGTAGCCAATCGACGCAGAAGGCCGAATCGTGGTGGCCGCCTAAGGCGGCTTCTTCCGGCCGGGCAGAGCGGTGGATACGGTCGTTGAAGGACCCTGGGTGCGGAATTTGTGGCTTTAGCAGattgagaTCATGGCAGGTCCAGAAGCTGATGAACAATTTCAGTTCACtggtattaaaaaatatttcaactcTTACACTCTCACAGGTAGAAGGAATtgTGTACTGGCCACATACGGAGGCATTGCTTTGATTATCTTATATTTCAAGTTAAGGTCCAAAAAAACTCCAGCTGTGAAAGCAACATAAATGGATTTTAAACTGCCTCTGGTTCTTAACCTCATCTGTTAAGTTCCATGCCTGGAGAAGCTAATCCCAACTCATCATGTGATAATACAATTTGTACAATAAATTATGAACCTGGAAAA

Publications

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